miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29528 3' -55.4 NC_006151.1 + 114933 0.67 0.888069
Target:  5'- cGCGCUcgGCCUCCGGGguggGCGCgaugaugaCGUaGGa -3'
miRNA:   3'- aCGUGG--UGGAGGUCUa---CGUGa-------GCA-CC- -5'
29528 3' -55.4 NC_006151.1 + 123012 0.67 0.888069
Target:  5'- cGCGCCcCCgCCGGcgGaCGC-CGUGGc -3'
miRNA:   3'- aCGUGGuGGaGGUCuaC-GUGaGCACC- -5'
29528 3' -55.4 NC_006151.1 + 139810 0.67 0.888069
Target:  5'- cGCGCCGCCgucUCCGcGAcGCACgCGcGGg -3'
miRNA:   3'- aCGUGGUGG---AGGU-CUaCGUGaGCaCC- -5'
29528 3' -55.4 NC_006151.1 + 66532 0.67 0.881787
Target:  5'- cGCGCCGCgCUCUucGGggGCGCgcgcggccgcgccgcCGUGGa -3'
miRNA:   3'- aCGUGGUG-GAGG--UCuaCGUGa--------------GCACC- -5'
29528 3' -55.4 NC_006151.1 + 94970 0.67 0.873863
Target:  5'- cGCAUCGgCUCgCGGAgcgagacGCGCUCGUaGGc -3'
miRNA:   3'- aCGUGGUgGAG-GUCUa------CGUGAGCA-CC- -5'
29528 3' -55.4 NC_006151.1 + 81771 0.67 0.873863
Target:  5'- gGCGCCACCg--GGAcGCGCUCGg-- -3'
miRNA:   3'- aCGUGGUGGaggUCUaCGUGAGCacc -5'
29528 3' -55.4 NC_006151.1 + 74770 0.67 0.869428
Target:  5'- cUGCGCCACgagCCgcgcgagcgcgcagaAGGUGCGCUCGcucccgUGGa -3'
miRNA:   3'- -ACGUGGUGga-GG---------------UCUACGUGAGC------ACC- -5'
29528 3' -55.4 NC_006151.1 + 91904 0.67 0.866427
Target:  5'- -cCGCCACCgUCuGGUGCGCUCGgaGGc -3'
miRNA:   3'- acGUGGUGGaGGuCUACGUGAGCa-CC- -5'
29528 3' -55.4 NC_006151.1 + 132406 0.67 0.866427
Target:  5'- cGCACCAgCUgCCGGAgcuUGCcCUCGUcgcGGc -3'
miRNA:   3'- aCGUGGUgGA-GGUCU---ACGuGAGCA---CC- -5'
29528 3' -55.4 NC_006151.1 + 135429 0.67 0.858777
Target:  5'- cGCGCCAggcaCUCCAGGUuGCGCUgGcaggccUGGu -3'
miRNA:   3'- aCGUGGUg---GAGGUCUA-CGUGAgC------ACC- -5'
29528 3' -55.4 NC_006151.1 + 67786 0.67 0.858777
Target:  5'- gGCGuCCACgugCUCCAcGcgGCACUCGcGGc -3'
miRNA:   3'- aCGU-GGUG---GAGGU-CuaCGUGAGCaCC- -5'
29528 3' -55.4 NC_006151.1 + 140303 0.67 0.858777
Target:  5'- gGCGCCGCCUgCGGGacgUGCGCugcaUCGUc- -3'
miRNA:   3'- aCGUGGUGGAgGUCU---ACGUG----AGCAcc -5'
29528 3' -55.4 NC_006151.1 + 99964 0.68 0.850919
Target:  5'- cGCACCAag-CUcGccGCGCUCGUGGc -3'
miRNA:   3'- aCGUGGUggaGGuCuaCGUGAGCACC- -5'
29528 3' -55.4 NC_006151.1 + 84021 0.68 0.850919
Target:  5'- gUGCGCCGCC-CCGacUGCGUgugCGUGGu -3'
miRNA:   3'- -ACGUGGUGGaGGUcuACGUGa--GCACC- -5'
29528 3' -55.4 NC_006151.1 + 73578 0.68 0.848522
Target:  5'- cGCACCACCgucagggcgaagCCgGGGUGCagcuggcgccgcaGCUgGUGGg -3'
miRNA:   3'- aCGUGGUGGa-----------GG-UCUACG-------------UGAgCACC- -5'
29528 3' -55.4 NC_006151.1 + 114424 0.68 0.84286
Target:  5'- gUGCACCACCgcgugCUGGAccGCcuGCUCG-GGg -3'
miRNA:   3'- -ACGUGGUGGa----GGUCUa-CG--UGAGCaCC- -5'
29528 3' -55.4 NC_006151.1 + 59002 0.68 0.84286
Target:  5'- aGCGCgGCgUCCAGcgGCGCgUCGaagccgcccUGGg -3'
miRNA:   3'- aCGUGgUGgAGGUCuaCGUG-AGC---------ACC- -5'
29528 3' -55.4 NC_006151.1 + 88276 0.68 0.84286
Target:  5'- cGCACCgagACCgccgCCGGGUGgUAgaCGUGGg -3'
miRNA:   3'- aCGUGG---UGGa---GGUCUAC-GUgaGCACC- -5'
29528 3' -55.4 NC_006151.1 + 113434 0.68 0.84286
Target:  5'- cUGCGCCGCUUCCg---GCGCggCGUGc -3'
miRNA:   3'- -ACGUGGUGGAGGucuaCGUGa-GCACc -5'
29528 3' -55.4 NC_006151.1 + 85811 0.68 0.834605
Target:  5'- aGCGCCACCagcucaaCCGG-UGCGcCUgGUGGc -3'
miRNA:   3'- aCGUGGUGGa------GGUCuACGU-GAgCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.