miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29528 5' -67.5 NC_006151.1 + 60089 0.66 0.390578
Target:  5'- gCGCGCCGCCgCgaaCGC-CGGGcGGCa--- -3'
miRNA:   3'- -GCGCGGCGG-Ga--GCGcGCCC-CCGcaca -5'
29528 5' -67.5 NC_006151.1 + 106134 0.66 0.390578
Target:  5'- cCGUGCuggccacgaCGCUCUCGCGCaccuucGGGGCGcUGg -3'
miRNA:   3'- -GCGCG---------GCGGGAGCGCGc-----CCCCGC-ACa -5'
29528 5' -67.5 NC_006151.1 + 112434 0.66 0.390578
Target:  5'- cCGCGCCGCCgCcgcCGCGCGccauGGGC-UGg -3'
miRNA:   3'- -GCGCGGCGG-Ga--GCGCGCc---CCCGcACa -5'
29528 5' -67.5 NC_006151.1 + 93550 0.66 0.382838
Target:  5'- aGCGCCaugggaaaGUCCgC-CGCGGGGGCGg-- -3'
miRNA:   3'- gCGCGG--------CGGGaGcGCGCCCCCGCaca -5'
29528 5' -67.5 NC_006151.1 + 104555 0.66 0.382838
Target:  5'- aGCugGCCGCCCUgggCGCGCGGcgcgcGGaCGUGc -3'
miRNA:   3'- gCG--CGGCGGGA---GCGCGCCc----CC-GCACa -5'
29528 5' -67.5 NC_006151.1 + 23140 0.66 0.382838
Target:  5'- cCGuCGCCggGCCCUCG-GCGGGagcGGCGg-- -3'
miRNA:   3'- -GC-GCGG--CGGGAGCgCGCCC---CCGCaca -5'
29528 5' -67.5 NC_006151.1 + 104374 0.66 0.378244
Target:  5'- aCGgaGCCGCUCUCGCGgcuggcccgcaucgcCGGcGGCGUGc -3'
miRNA:   3'- -GCg-CGGCGGGAGCGC---------------GCCcCCGCACa -5'
29528 5' -67.5 NC_006151.1 + 112313 0.66 0.377482
Target:  5'- uCGCGCggcaucaCGUCCUCGaaccagacgcgcaccCGCGGGGGCa--- -3'
miRNA:   3'- -GCGCG-------GCGGGAGC---------------GCGCCCCCGcaca -5'
29528 5' -67.5 NC_006151.1 + 62067 0.66 0.377482
Target:  5'- gCGCGCCGUcgugacgaacgucguCCUCgGCGCGGucggccuGGGCGcGg -3'
miRNA:   3'- -GCGCGGCG---------------GGAG-CGCGCC-------CCCGCaCa -5'
29528 5' -67.5 NC_006151.1 + 72899 0.66 0.375961
Target:  5'- cCGCGCCaGCCCccggcucuuggcgacCGCcuCGGcGGGCGUGa -3'
miRNA:   3'- -GCGCGG-CGGGa--------------GCGc-GCC-CCCGCACa -5'
29528 5' -67.5 NC_006151.1 + 131498 0.66 0.375202
Target:  5'- gGUGCaccaggaGCCC-CGCGCGGGGGaaCGg-- -3'
miRNA:   3'- gCGCGg------CGGGaGCGCGCCCCC--GCaca -5'
29528 5' -67.5 NC_006151.1 + 58129 0.66 0.375202
Target:  5'- uCGCGUCGCCCgCGCcguacGCGGccGCGUGc -3'
miRNA:   3'- -GCGCGGCGGGaGCG-----CGCCccCGCACa -5'
29528 5' -67.5 NC_006151.1 + 75367 0.66 0.372931
Target:  5'- -aCGCCGUCCUUGUugaagaagugcacgGCGcGGGGCGgGUg -3'
miRNA:   3'- gcGCGGCGGGAGCG--------------CGC-CCCCGCaCA- -5'
29528 5' -67.5 NC_006151.1 + 7129 0.67 0.37067
Target:  5'- gCGCGCCaauGagauuguccgaaaauCCCUCGCGCGGGcGCGa-- -3'
miRNA:   3'- -GCGCGG---C---------------GGGAGCGCGCCCcCGCaca -5'
29528 5' -67.5 NC_006151.1 + 99092 0.67 0.367669
Target:  5'- gCGCGgCGCCUgCGCaCGGaccaGGGCGUGc -3'
miRNA:   3'- -GCGCgGCGGGaGCGcGCC----CCCGCACa -5'
29528 5' -67.5 NC_006151.1 + 128596 0.67 0.367669
Target:  5'- uCGCGCgGCCCgCGCGCcacccGcGGCGUGc -3'
miRNA:   3'- -GCGCGgCGGGaGCGCGc----CcCCGCACa -5'
29528 5' -67.5 NC_006151.1 + 3137 0.67 0.367669
Target:  5'- gGCGCggggCGCCCUCG-GCGGGcucGGCGc-- -3'
miRNA:   3'- gCGCG----GCGGGAGCgCGCCC---CCGCaca -5'
29528 5' -67.5 NC_006151.1 + 27224 0.67 0.367669
Target:  5'- gCGCGCCGUggacgcgcaccuCCUCGgggucggGCGGGGGCccGUa -3'
miRNA:   3'- -GCGCGGCG------------GGAGCg------CGCCCCCGcaCA- -5'
29528 5' -67.5 NC_006151.1 + 72081 0.67 0.367669
Target:  5'- cCGCGCCGUCagCUCGCGgGccuGGGCGa-- -3'
miRNA:   3'- -GCGCGGCGG--GAGCGCgCc--CCCGCaca -5'
29528 5' -67.5 NC_006151.1 + 3264 0.67 0.360241
Target:  5'- gGCGCCGCgg-CGCGCGGcgaugugcgccaGGGCGg-- -3'
miRNA:   3'- gCGCGGCGggaGCGCGCC------------CCCGCaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.