miRNA display CGI


Results 21 - 40 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29529 3' -59.2 NC_006151.1 + 81218 0.66 0.801147
Target:  5'- cGGGCGccgGCGCGUGaacACGAaGCuGGCGc -3'
miRNA:   3'- -CCUGCca-CGCGCACa--UGCUcCG-CCGC- -5'
29529 3' -59.2 NC_006151.1 + 88478 0.66 0.801147
Target:  5'- cGGccACGGUGC-UGUugGUcACGaAGGCGGCGu -3'
miRNA:   3'- -CC--UGCCACGcGCA--CA-UGC-UCCGCCGC- -5'
29529 3' -59.2 NC_006151.1 + 104573 0.66 0.801147
Target:  5'- -cGCGGcGCGCGgacGUGCuGcAGGCcGGCGg -3'
miRNA:   3'- ccUGCCaCGCGCa--CAUG-C-UCCG-CCGC- -5'
29529 3' -59.2 NC_006151.1 + 8080 0.66 0.801147
Target:  5'- cGACGG-G-GCGUG-GCGGGGCguGGCa -3'
miRNA:   3'- cCUGCCaCgCGCACaUGCUCCG--CCGc -5'
29529 3' -59.2 NC_006151.1 + 90699 0.66 0.801147
Target:  5'- gGGGCGGcgGaCGCGcccgcccCGcAGGCGGCGg -3'
miRNA:   3'- -CCUGCCa-C-GCGCacau---GC-UCCGCCGC- -5'
29529 3' -59.2 NC_006151.1 + 141382 0.66 0.795929
Target:  5'- gGGGCGG-GCcccgggcaaacagcgGCGUGUccggcgaucgguGCGGGcGCGGCc -3'
miRNA:   3'- -CCUGCCaCG---------------CGCACA------------UGCUC-CGCCGc -5'
29529 3' -59.2 NC_006151.1 + 83593 0.66 0.795929
Target:  5'- -aGCGGgaccagGCGCGUGUgcagcagcagguacgGCGucgcgaAGGCGGCc -3'
miRNA:   3'- ccUGCCa-----CGCGCACA---------------UGC------UCCGCCGc -5'
29529 3' -59.2 NC_006151.1 + 130265 0.66 0.792423
Target:  5'- aGGcCGGcGCGCGgcccCGAGGCcGCGg -3'
miRNA:   3'- -CCuGCCaCGCGCacauGCUCCGcCGC- -5'
29529 3' -59.2 NC_006151.1 + 20974 0.66 0.792423
Target:  5'- aGGuuGG-GCGCGUcgccGggcACGAGGaCGGCGc -3'
miRNA:   3'- -CCugCCaCGCGCA----Ca--UGCUCC-GCCGC- -5'
29529 3' -59.2 NC_006151.1 + 135466 0.66 0.792423
Target:  5'- ---aGGUGCGCGccagcgUGUccGCGcgggccAGGCGGCGc -3'
miRNA:   3'- ccugCCACGCGC------ACA--UGC------UCCGCCGC- -5'
29529 3' -59.2 NC_006151.1 + 21578 0.66 0.783564
Target:  5'- cGAgGGccGCGCGggGUcgauggcguacgGCGuGGCGGCGg -3'
miRNA:   3'- cCUgCCa-CGCGCa-CA------------UGCuCCGCCGC- -5'
29529 3' -59.2 NC_006151.1 + 26358 0.66 0.783564
Target:  5'- cGGCGGgccgcgucgggGCGCGcGUcccccgGCG-GGCGGCGu -3'
miRNA:   3'- cCUGCCa----------CGCGCaCA------UGCuCCGCCGC- -5'
29529 3' -59.2 NC_006151.1 + 130679 0.66 0.783564
Target:  5'- -cGCGGgGCGCGgcgcaggaUGUccgggggcccgACGGGGCGGCc -3'
miRNA:   3'- ccUGCCaCGCGC--------ACA-----------UGCUCCGCCGc -5'
29529 3' -59.2 NC_006151.1 + 55358 0.66 0.774577
Target:  5'- gGGGCcuccgcgagcaGGUGCGCGaGcGCGAGcaggagguGCGGCGc -3'
miRNA:   3'- -CCUG-----------CCACGCGCaCaUGCUC--------CGCCGC- -5'
29529 3' -59.2 NC_006151.1 + 20480 0.66 0.774577
Target:  5'- cGGGgGG-GCGCGgggGU-CGucGGCGGCu -3'
miRNA:   3'- -CCUgCCaCGCGCa--CAuGCu-CCGCCGc -5'
29529 3' -59.2 NC_006151.1 + 21287 0.66 0.774577
Target:  5'- -cGCGGUGCcCGUGccgACGAucaccgagcGGUGGCGc -3'
miRNA:   3'- ccUGCCACGcGCACa--UGCU---------CCGCCGC- -5'
29529 3' -59.2 NC_006151.1 + 31769 0.67 0.765471
Target:  5'- cGGCGG-GCGCGc--GCcGGGCGGCu -3'
miRNA:   3'- cCUGCCaCGCGCacaUGcUCCGCCGc -5'
29529 3' -59.2 NC_006151.1 + 20856 0.67 0.765471
Target:  5'- cGGCGGcguacucGCGCGUGUAgcAGGCGcGCu -3'
miRNA:   3'- cCUGCCa------CGCGCACAUgcUCCGC-CGc -5'
29529 3' -59.2 NC_006151.1 + 80252 0.67 0.765471
Target:  5'- aGGGCGGUGgGagagagGgcgACGAGGguaCGGCGg -3'
miRNA:   3'- -CCUGCCACgCgca---Ca--UGCUCC---GCCGC- -5'
29529 3' -59.2 NC_006151.1 + 33238 0.67 0.765471
Target:  5'- cGGGCGGgaggGgGUccgggggaaggGUGggGCGGuGGCGGCGg -3'
miRNA:   3'- -CCUGCCa---CgCG-----------CACa-UGCU-CCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.