Results 41 - 60 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29529 | 5' | -58.1 | NC_006151.1 | + | 84253 | 0.69 | 0.647356 |
Target: 5'- --aGCGGAGC--AUGcGCGUGCUCGAc -3' miRNA: 3'- augCGCCUCGagUACcUGCGCGAGCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 123269 | 0.69 | 0.626995 |
Target: 5'- cGCGCGcGGGCaccgUCGUGGACGaGCgCGAg -3' miRNA: 3'- aUGCGC-CUCG----AGUACCUGCgCGaGCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 74446 | 0.69 | 0.637178 |
Target: 5'- gACGCGcAGCUCcgGcAgGCGCUCGGc -3' miRNA: 3'- aUGCGCcUCGAGuaCcUgCGCGAGCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 66554 | 0.69 | 0.637178 |
Target: 5'- cGCGCGGccGCgccgcCGUGGACccgGCGCUCGc -3' miRNA: 3'- aUGCGCCu-CGa----GUACCUG---CGCGAGCu -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 104038 | 0.69 | 0.647356 |
Target: 5'- cGCGCGcagcgccAGCUC-UGGGCGCGCgCGGc -3' miRNA: 3'- aUGCGCc------UCGAGuACCUGCGCGaGCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 89326 | 0.69 | 0.657523 |
Target: 5'- cACGCGcGAGCgaggcCAUGG-CGCGUgCGAa -3' miRNA: 3'- aUGCGC-CUCGa----GUACCuGCGCGaGCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 120377 | 0.69 | 0.616817 |
Target: 5'- aGCGCccGGAcacgGC-CGUGGACGUGCUCa- -3' miRNA: 3'- aUGCG--CCU----CGaGUACCUGCGCGAGcu -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 102619 | 0.69 | 0.60665 |
Target: 5'- --aGCGGGcGCgcgaCGUGaGCGCGCUCGAg -3' miRNA: 3'- augCGCCU-CGa---GUACcUGCGCGAGCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 27210 | 0.69 | 0.616817 |
Target: 5'- gGCGcCGGGGCcccgcgcgcCGUGGACGCGCaccuccUCGGg -3' miRNA: 3'- aUGC-GCCUCGa--------GUACCUGCGCG------AGCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 128220 | 0.69 | 0.60665 |
Target: 5'- gGCGUGcgacGAGCUCGUGGGCGCcaggucGC-CGAu -3' miRNA: 3'- aUGCGC----CUCGAGUACCUGCG------CGaGCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 135121 | 0.69 | 0.616817 |
Target: 5'- cGCGCGGGGCgggC-UGGGCGgGgaCGGg -3' miRNA: 3'- aUGCGCCUCGa--GuACCUGCgCgaGCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 84399 | 0.69 | 0.60665 |
Target: 5'- gGCGgGGAGCggGUGGGCGCGg-UGAu -3' miRNA: 3'- aUGCgCCUCGagUACCUGCGCgaGCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 2779 | 0.69 | 0.60665 |
Target: 5'- cGCGCGGAGCUCGcggcacccGGGCcaGCGCaCGGc -3' miRNA: 3'- aUGCGCCUCGAGUa-------CCUG--CGCGaGCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 20320 | 0.68 | 0.677787 |
Target: 5'- gUugGCGGcGGCgagCA-GGACGCGCgacaCGAc -3' miRNA: 3'- -AugCGCC-UCGa--GUaCCUGCGCGa---GCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 20486 | 0.68 | 0.687868 |
Target: 5'- gGCGCGGGGgUCGUcGGCGgcucugGCUCGAu -3' miRNA: 3'- aUGCGCCUCgAGUAcCUGCg-----CGAGCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 105802 | 0.68 | 0.677787 |
Target: 5'- gGCGCGGAGCgaCGcGGACGCGgUg-- -3' miRNA: 3'- aUGCGCCUCGa-GUaCCUGCGCgAgcu -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 86151 | 0.68 | 0.667669 |
Target: 5'- gGCGgGGAGCUCGcgcuGACGCGCg--- -3' miRNA: 3'- aUGCgCCUCGAGUac--CUGCGCGagcu -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 92486 | 0.68 | 0.667669 |
Target: 5'- cUACuCGGAGUUCcUGGcCGCGUUCGu -3' miRNA: 3'- -AUGcGCCUCGAGuACCuGCGCGAGCu -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 118445 | 0.68 | 0.667669 |
Target: 5'- gUGCGCGcGGCUCGgccuggccgcGGACGCGCacgCGGc -3' miRNA: 3'- -AUGCGCcUCGAGUa---------CCUGCGCGa--GCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 3457 | 0.68 | 0.677787 |
Target: 5'- gGCGCGGGGUgcucgggCAUGGGCccgagcggGCGC-CGGa -3' miRNA: 3'- aUGCGCCUCGa------GUACCUG--------CGCGaGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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