miRNA display CGI


Results 41 - 60 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29529 5' -58.1 NC_006151.1 + 102619 0.69 0.60665
Target:  5'- --aGCGGGcGCgcgaCGUGaGCGCGCUCGAg -3'
miRNA:   3'- augCGCCU-CGa---GUACcUGCGCGAGCU- -5'
29529 5' -58.1 NC_006151.1 + 128220 0.69 0.60665
Target:  5'- gGCGUGcgacGAGCUCGUGGGCGCcaggucGC-CGAu -3'
miRNA:   3'- aUGCGC----CUCGAGUACCUGCG------CGaGCU- -5'
29529 5' -58.1 NC_006151.1 + 135121 0.69 0.616817
Target:  5'- cGCGCGGGGCgggC-UGGGCGgGgaCGGg -3'
miRNA:   3'- aUGCGCCUCGa--GuACCUGCgCgaGCU- -5'
29529 5' -58.1 NC_006151.1 + 27210 0.69 0.616817
Target:  5'- gGCGcCGGGGCcccgcgcgcCGUGGACGCGCaccuccUCGGg -3'
miRNA:   3'- aUGC-GCCUCGa--------GUACCUGCGCG------AGCU- -5'
29529 5' -58.1 NC_006151.1 + 120377 0.69 0.616817
Target:  5'- aGCGCccGGAcacgGC-CGUGGACGUGCUCa- -3'
miRNA:   3'- aUGCG--CCU----CGaGUACCUGCGCGAGcu -5'
29529 5' -58.1 NC_006151.1 + 123269 0.69 0.626995
Target:  5'- cGCGCGcGGGCaccgUCGUGGACGaGCgCGAg -3'
miRNA:   3'- aUGCGC-CUCG----AGUACCUGCgCGaGCU- -5'
29529 5' -58.1 NC_006151.1 + 85634 0.69 0.626995
Target:  5'- cGCGCGGcGC-CAgcggGGACGCGCcCGc -3'
miRNA:   3'- aUGCGCCuCGaGUa---CCUGCGCGaGCu -5'
29529 5' -58.1 NC_006151.1 + 66554 0.69 0.637178
Target:  5'- cGCGCGGccGCgccgcCGUGGACccgGCGCUCGc -3'
miRNA:   3'- aUGCGCCu-CGa----GUACCUG---CGCGAGCu -5'
29529 5' -58.1 NC_006151.1 + 74446 0.69 0.637178
Target:  5'- gACGCGcAGCUCcgGcAgGCGCUCGGc -3'
miRNA:   3'- aUGCGCcUCGAGuaCcUgCGCGAGCU- -5'
29529 5' -58.1 NC_006151.1 + 84253 0.69 0.647356
Target:  5'- --aGCGGAGC--AUGcGCGUGCUCGAc -3'
miRNA:   3'- augCGCCUCGagUACcUGCGCGAGCU- -5'
29529 5' -58.1 NC_006151.1 + 104038 0.69 0.647356
Target:  5'- cGCGCGcagcgccAGCUC-UGGGCGCGCgCGGc -3'
miRNA:   3'- aUGCGCc------UCGAGuACCUGCGCGaGCU- -5'
29529 5' -58.1 NC_006151.1 + 120214 0.69 0.647356
Target:  5'- aGCGCGGAGCcCccGG-CGCGCgaccaCGAc -3'
miRNA:   3'- aUGCGCCUCGaGuaCCuGCGCGa----GCU- -5'
29529 5' -58.1 NC_006151.1 + 89326 0.69 0.657523
Target:  5'- cACGCGcGAGCgaggcCAUGG-CGCGUgCGAa -3'
miRNA:   3'- aUGCGC-CUCGa----GUACCuGCGCGaGCU- -5'
29529 5' -58.1 NC_006151.1 + 86151 0.68 0.667669
Target:  5'- gGCGgGGAGCUCGcgcuGACGCGCg--- -3'
miRNA:   3'- aUGCgCCUCGAGUac--CUGCGCGagcu -5'
29529 5' -58.1 NC_006151.1 + 92486 0.68 0.667669
Target:  5'- cUACuCGGAGUUCcUGGcCGCGUUCGu -3'
miRNA:   3'- -AUGcGCCUCGAGuACCuGCGCGAGCu -5'
29529 5' -58.1 NC_006151.1 + 118445 0.68 0.667669
Target:  5'- gUGCGCGcGGCUCGgccuggccgcGGACGCGCacgCGGc -3'
miRNA:   3'- -AUGCGCcUCGAGUa---------CCUGCGCGa--GCU- -5'
29529 5' -58.1 NC_006151.1 + 3457 0.68 0.677787
Target:  5'- gGCGCGGGGUgcucgggCAUGGGCccgagcggGCGC-CGGa -3'
miRNA:   3'- aUGCGCCUCGa------GUACCUG--------CGCGaGCU- -5'
29529 5' -58.1 NC_006151.1 + 20320 0.68 0.677787
Target:  5'- gUugGCGGcGGCgagCA-GGACGCGCgacaCGAc -3'
miRNA:   3'- -AugCGCC-UCGa--GUaCCUGCGCGa---GCU- -5'
29529 5' -58.1 NC_006151.1 + 105802 0.68 0.677787
Target:  5'- gGCGCGGAGCgaCGcGGACGCGgUg-- -3'
miRNA:   3'- aUGCGCCUCGa-GUaCCUGCGCgAgcu -5'
29529 5' -58.1 NC_006151.1 + 29459 0.68 0.677787
Target:  5'- gACGCGGAGggagcGGGCGCGC-CGGg -3'
miRNA:   3'- aUGCGCCUCgaguaCCUGCGCGaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.