Results 81 - 100 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29529 | 5' | -58.1 | NC_006151.1 | + | 118946 | 0.72 | 0.469165 |
Target: 5'- gACGCGGcGCugUCGcUGGAgGCGCUCGu -3' miRNA: 3'- aUGCGCCuCG--AGU-ACCUgCGCGAGCu -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 25111 | 0.72 | 0.459907 |
Target: 5'- cUGCGUGcGAGCgcugggCGUGGACGCGCg--- -3' miRNA: 3'- -AUGCGC-CUCGa-----GUACCUGCGCGagcu -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 119120 | 0.72 | 0.459907 |
Target: 5'- cGCGCGGccGGcCUCGUGGGgGCGCUgGu -3' miRNA: 3'- aUGCGCC--UC-GAGUACCUgCGCGAgCu -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 98235 | 0.72 | 0.436304 |
Target: 5'- cGCGCggacccucuuauaauGGAggcGCUCGUGcGCGCGCUCGAg -3' miRNA: 3'- aUGCG---------------CCU---CGAGUACcUGCGCGAGCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 140461 | 0.72 | 0.432735 |
Target: 5'- --gGCGGGa-UCAUGGACGCGCUgGAc -3' miRNA: 3'- augCGCCUcgAGUACCUGCGCGAgCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 128828 | 0.73 | 0.423887 |
Target: 5'- gUACGCGGcGCUC-UGGGCcuuGUGCUUGAa -3' miRNA: 3'- -AUGCGCCuCGAGuACCUG---CGCGAGCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 122687 | 0.73 | 0.406521 |
Target: 5'- cGCGCGGcGGC-CGUGGAgcuCGCGCUCu- -3' miRNA: 3'- aUGCGCC-UCGaGUACCU---GCGCGAGcu -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 77626 | 0.73 | 0.406521 |
Target: 5'- cGCGCGGAGC---UGGACGUGUaCGAc -3' miRNA: 3'- aUGCGCCUCGaguACCUGCGCGaGCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 117511 | 0.74 | 0.373163 |
Target: 5'- aGCGCGGA-CUCAcGGGC-CGCUCGGg -3' miRNA: 3'- aUGCGCCUcGAGUaCCUGcGCGAGCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 21504 | 0.74 | 0.357196 |
Target: 5'- gGCGCGG-GCgUCAccgGGGCGgGCUCGGg -3' miRNA: 3'- aUGCGCCuCG-AGUa--CCUGCgCGAGCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 120798 | 0.75 | 0.329682 |
Target: 5'- gACGCGGAGCgCGccgcgcgcgaggugcUGGACGCGCcgcgCGAc -3' miRNA: 3'- aUGCGCCUCGaGU---------------ACCUGCGCGa---GCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 130309 | 0.75 | 0.326723 |
Target: 5'- gGCGCGGAGCgcgCGcgccGCGCGCUCGGg -3' miRNA: 3'- aUGCGCCUCGa--GUacc-UGCGCGAGCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 102416 | 0.75 | 0.326723 |
Target: 5'- cGCGCGGcccgcgaacgaGGC-CAugcaccgggcgcUGGACGCGCUCGAg -3' miRNA: 3'- aUGCGCC-----------UCGaGU------------ACCUGCGCGAGCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 58856 | 0.75 | 0.312225 |
Target: 5'- cGCGUGGAGCUCGcccGGCGCGC-CGGg -3' miRNA: 3'- aUGCGCCUCGAGUac-CUGCGCGaGCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 137317 | 0.75 | 0.305161 |
Target: 5'- cGCGCGGuGCUC---GACGCGCUCGc -3' miRNA: 3'- aUGCGCCuCGAGuacCUGCGCGAGCu -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 20451 | 0.75 | 0.29822 |
Target: 5'- --aGCGGGGCUCGggGGugGCGC-CGGu -3' miRNA: 3'- augCGCCUCGAGUa-CCugCGCGaGCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 19266 | 0.75 | 0.29822 |
Target: 5'- --aGCGGGGCUCGUGG-CGCGCggGGc -3' miRNA: 3'- augCGCCUCGAGUACCuGCGCGagCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 98364 | 0.76 | 0.278135 |
Target: 5'- gUGCGCGG-GCUC-UGGGCGCGCgCGc -3' miRNA: 3'- -AUGCGCCuCGAGuACCUGCGCGaGCu -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 53994 | 0.76 | 0.271683 |
Target: 5'- -uCGCGGcgAGCUCccGGACGCGCUCc- -3' miRNA: 3'- auGCGCC--UCGAGuaCCUGCGCGAGcu -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 28112 | 0.76 | 0.271683 |
Target: 5'- gGCGCGGcuccucgucGGCUCG-GGGCGCGCUCc- -3' miRNA: 3'- aUGCGCC---------UCGAGUaCCUGCGCGAGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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