miRNA display CGI


Results 41 - 60 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29529 5' -58.1 NC_006151.1 + 84713 0.67 0.7178
Target:  5'- cAgGUGGAGCgCGUGGccgAgGCGCUCGu -3'
miRNA:   3'- aUgCGCCUCGaGUACC---UgCGCGAGCu -5'
29529 5' -58.1 NC_006151.1 + 85414 0.68 0.687868
Target:  5'- gGCGCGG-GCuUCGUGGAcgaggucaacCGCGCcgCGGc -3'
miRNA:   3'- aUGCGCCuCG-AGUACCU----------GCGCGa-GCU- -5'
29529 5' -58.1 NC_006151.1 + 85634 0.69 0.626995
Target:  5'- cGCGCGGcGC-CAgcggGGACGCGCcCGc -3'
miRNA:   3'- aUGCGCCuCGaGUa---CCUGCGCGaGCu -5'
29529 5' -58.1 NC_006151.1 + 85802 0.67 0.74708
Target:  5'- cGCGCGuGcagcgccaccAGCUCAaccggugcgccUGGugGCGCUgGAg -3'
miRNA:   3'- aUGCGC-C----------UCGAGU-----------ACCugCGCGAgCU- -5'
29529 5' -58.1 NC_006151.1 + 86151 0.68 0.667669
Target:  5'- gGCGgGGAGCUCGcgcuGACGCGCg--- -3'
miRNA:   3'- aUGCgCCUCGAGUac--CUGCGCGagcu -5'
29529 5' -58.1 NC_006151.1 + 86558 0.66 0.775461
Target:  5'- gGCGCcguuccGGcAGCUCucggcgcGGGCGCGCUcCGAg -3'
miRNA:   3'- aUGCG------CC-UCGAGua-----CCUGCGCGA-GCU- -5'
29529 5' -58.1 NC_006151.1 + 88866 0.67 0.756652
Target:  5'- cGCG-GGAGCUCc-GGGCGCggggGCUCGu -3'
miRNA:   3'- aUGCgCCUCGAGuaCCUGCG----CGAGCu -5'
29529 5' -58.1 NC_006151.1 + 89057 0.71 0.507101
Target:  5'- gUGCGCGGuGGCcuugucgcCGUGGACGCGCgucCGGu -3'
miRNA:   3'- -AUGCGCC-UCGa-------GUACCUGCGCGa--GCU- -5'
29529 5' -58.1 NC_006151.1 + 89326 0.69 0.657523
Target:  5'- cACGCGcGAGCgaggcCAUGG-CGCGUgCGAa -3'
miRNA:   3'- aUGCGC-CUCGa----GUACCuGCGCGaGCU- -5'
29529 5' -58.1 NC_006151.1 + 90663 0.67 0.766115
Target:  5'- aUGCGCGGGGCggc-GGGC-CGCUUGu -3'
miRNA:   3'- -AUGCGCCUCGaguaCCUGcGCGAGCu -5'
29529 5' -58.1 NC_006151.1 + 92486 0.68 0.667669
Target:  5'- cUACuCGGAGUUCcUGGcCGCGUUCGu -3'
miRNA:   3'- -AUGcGCCUCGAGuACCuGCGCGAGCu -5'
29529 5' -58.1 NC_006151.1 + 94979 0.72 0.478517
Target:  5'- -uCGCGGAGCga---GACGCGCUCGu -3'
miRNA:   3'- auGCGCCUCGaguacCUGCGCGAGCu -5'
29529 5' -58.1 NC_006151.1 + 96590 0.66 0.793762
Target:  5'- gGCGCGaGGCgccgggCGcGGGCGCGC-CGAc -3'
miRNA:   3'- aUGCGCcUCGa-----GUaCCUGCGCGaGCU- -5'
29529 5' -58.1 NC_006151.1 + 98235 0.72 0.436304
Target:  5'- cGCGCggacccucuuauaauGGAggcGCUCGUGcGCGCGCUCGAg -3'
miRNA:   3'- aUGCG---------------CCU---CGAGUACcUGCGCGAGCU- -5'
29529 5' -58.1 NC_006151.1 + 98364 0.76 0.278135
Target:  5'- gUGCGCGG-GCUC-UGGGCGCGCgCGc -3'
miRNA:   3'- -AUGCGCCuCGAGuACCUGCGCGaGCu -5'
29529 5' -58.1 NC_006151.1 + 98953 0.66 0.775461
Target:  5'- gGCGCGG-GC-CGUGGACgaggcgGCGCUgGu -3'
miRNA:   3'- aUGCGCCuCGaGUACCUG------CGCGAgCu -5'
29529 5' -58.1 NC_006151.1 + 99236 0.67 0.74708
Target:  5'- -cCGCuGcAGgUCGUGGAgGCGCUCGu -3'
miRNA:   3'- auGCGcC-UCgAGUACCUgCGCGAGCu -5'
29529 5' -58.1 NC_006151.1 + 99503 0.67 0.766115
Target:  5'- gGCGUGGAGCaCGUGG-UGCGC-Ca- -3'
miRNA:   3'- aUGCGCCUCGaGUACCuGCGCGaGcu -5'
29529 5' -58.1 NC_006151.1 + 99698 0.66 0.820111
Target:  5'- gGCGCcggGGAGaCgccCAUGGAgGCGC-CGAc -3'
miRNA:   3'- aUGCG---CCUC-Ga--GUACCUgCGCGaGCU- -5'
29529 5' -58.1 NC_006151.1 + 99889 0.7 0.556235
Target:  5'- cGCGCGGAccuggcgcagguGCUgaCGUGGGCGCGCgacuaCGGc -3'
miRNA:   3'- aUGCGCCU------------CGA--GUACCUGCGCGa----GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.