miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29529 5' -58.1 NC_006151.1 + 119120 0.72 0.459907
Target:  5'- cGCGCGGccGGcCUCGUGGGgGCGCUgGu -3'
miRNA:   3'- aUGCGCC--UC-GAGUACCUgCGCGAgCu -5'
29529 5' -58.1 NC_006151.1 + 118946 0.72 0.469165
Target:  5'- gACGCGGcGCugUCGcUGGAgGCGCUCGu -3'
miRNA:   3'- aUGCGCCuCG--AGU-ACCUgCGCGAGCu -5'
29529 5' -58.1 NC_006151.1 + 118445 0.68 0.667669
Target:  5'- gUGCGCGcGGCUCGgccuggccgcGGACGCGCacgCGGc -3'
miRNA:   3'- -AUGCGCcUCGAGUa---------CCUGCGCGa--GCU- -5'
29529 5' -58.1 NC_006151.1 + 117511 0.74 0.373163
Target:  5'- aGCGCGGA-CUCAcGGGC-CGCUCGGg -3'
miRNA:   3'- aUGCGCCUcGAGUaCCUGcGCGAGCU- -5'
29529 5' -58.1 NC_006151.1 + 115575 0.7 0.576289
Target:  5'- gGCGCGcGGGCa---GGuCGCGCUCGAg -3'
miRNA:   3'- aUGCGC-CUCGaguaCCuGCGCGAGCU- -5'
29529 5' -58.1 NC_006151.1 + 113108 0.66 0.793762
Target:  5'- gGgGCGGGGC-CGcGGACGCGgaCGc -3'
miRNA:   3'- aUgCGCCUCGaGUaCCUGCGCgaGCu -5'
29529 5' -58.1 NC_006151.1 + 113052 0.67 0.74708
Target:  5'- gGCgGCGGAGCgCGaGGACGaCGCguaCGAg -3'
miRNA:   3'- aUG-CGCCUCGaGUaCCUGC-GCGa--GCU- -5'
29529 5' -58.1 NC_006151.1 + 112838 0.71 0.487959
Target:  5'- cGCGCGuGcucacGCUCGUGGACGUGCagCGGc -3'
miRNA:   3'- aUGCGC-Cu----CGAGUACCUGCGCGa-GCU- -5'
29529 5' -58.1 NC_006151.1 + 111549 0.66 0.811487
Target:  5'- gGCGCGcAGCggccgCGUGuccacgcccccGGCGCGCUUGAu -3'
miRNA:   3'- aUGCGCcUCGa----GUAC-----------CUGCGCGAGCU- -5'
29529 5' -58.1 NC_006151.1 + 110790 0.66 0.802701
Target:  5'- cGCGCGGGGCUa--GGGCGgGgggCGAg -3'
miRNA:   3'- aUGCGCCUCGAguaCCUGCgCga-GCU- -5'
29529 5' -58.1 NC_006151.1 + 107099 0.67 0.766115
Target:  5'- cGCGCGu-GCUC-UGGGCGcCGCcCGAg -3'
miRNA:   3'- aUGCGCcuCGAGuACCUGC-GCGaGCU- -5'
29529 5' -58.1 NC_006151.1 + 106325 0.68 0.697903
Target:  5'- gACGCGGuGCUgGaccgcgcgcUGGACGCGgUgGAc -3'
miRNA:   3'- aUGCGCCuCGAgU---------ACCUGCGCgAgCU- -5'
29529 5' -58.1 NC_006151.1 + 105802 0.68 0.677787
Target:  5'- gGCGCGGAGCgaCGcGGACGCGgUg-- -3'
miRNA:   3'- aUGCGCCUCGa-GUaCCUGCGCgAgcu -5'
29529 5' -58.1 NC_006151.1 + 105690 0.67 0.74708
Target:  5'- gGCGCGGGGCcgacgccggCGcGGccGCGCGcCUCGAc -3'
miRNA:   3'- aUGCGCCUCGa--------GUaCC--UGCGC-GAGCU- -5'
29529 5' -58.1 NC_006151.1 + 105510 0.68 0.707883
Target:  5'- gUGCGC-GAGCUCGaccgcaUGGcgGCGCGCaUCGGg -3'
miRNA:   3'- -AUGCGcCUCGAGU------ACC--UGCGCG-AGCU- -5'
29529 5' -58.1 NC_006151.1 + 105158 0.66 0.802701
Target:  5'- -cCGCGG-GCcCAUGGACgaguucgccgaGCGCaUCGAg -3'
miRNA:   3'- auGCGCCuCGaGUACCUG-----------CGCG-AGCU- -5'
29529 5' -58.1 NC_006151.1 + 104781 0.83 0.09947
Target:  5'- gUACGCGGAGC-CAUGcGCGCGCUCGu -3'
miRNA:   3'- -AUGCGCCUCGaGUACcUGCGCGAGCu -5'
29529 5' -58.1 NC_006151.1 + 104162 0.67 0.7178
Target:  5'- -cCGCGGAGCUgcgccccgccgcCGaGcGCGCGCUCGGc -3'
miRNA:   3'- auGCGCCUCGA------------GUaCcUGCGCGAGCU- -5'
29529 5' -58.1 NC_006151.1 + 104038 0.69 0.647356
Target:  5'- cGCGCGcagcgccAGCUC-UGGGCGCGCgCGGc -3'
miRNA:   3'- aUGCGCc------UCGAGuACCUGCGCGaGCU- -5'
29529 5' -58.1 NC_006151.1 + 102619 0.69 0.60665
Target:  5'- --aGCGGGcGCgcgaCGUGaGCGCGCUCGAg -3'
miRNA:   3'- augCGCCU-CGa---GUACcUGCGCGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.