Results 41 - 60 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29529 | 5' | -58.1 | NC_006151.1 | + | 102476 | 0.66 | 0.793762 |
Target: 5'- cUACGCGcAGCucucggcgugcuUCAUGGACGcCGCggcgCGGg -3' miRNA: 3'- -AUGCGCcUCG------------AGUACCUGC-GCGa---GCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 102416 | 0.75 | 0.326723 |
Target: 5'- cGCGCGGcccgcgaacgaGGC-CAugcaccgggcgcUGGACGCGCUCGAg -3' miRNA: 3'- aUGCGCC-----------UCGaGU------------ACCUGCGCGAGCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 102116 | 0.66 | 0.820111 |
Target: 5'- gUGCGCGGGccggagccuGUUCcccGGGCGCGC-CGGg -3' miRNA: 3'- -AUGCGCCU---------CGAGua-CCUGCGCGaGCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 100604 | 0.66 | 0.811487 |
Target: 5'- -cCGUGGAGCgcuUCcUGG-CGCGCUgGGa -3' miRNA: 3'- auGCGCCUCG---AGuACCuGCGCGAgCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 100228 | 0.77 | 0.229857 |
Target: 5'- gGCGCcguggccGAGCgCGUGGugGCGCUCGAg -3' miRNA: 3'- aUGCGc------CUCGaGUACCugCGCGAGCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 99889 | 0.7 | 0.556235 |
Target: 5'- cGCGCGGAccuggcgcagguGCUgaCGUGGGCGCGCgacuaCGGc -3' miRNA: 3'- aUGCGCCU------------CGA--GUACCUGCGCGa----GCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 99698 | 0.66 | 0.820111 |
Target: 5'- gGCGCcggGGAGaCgccCAUGGAgGCGC-CGAc -3' miRNA: 3'- aUGCG---CCUC-Ga--GUACCUgCGCGaGCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 99503 | 0.67 | 0.766115 |
Target: 5'- gGCGUGGAGCaCGUGG-UGCGC-Ca- -3' miRNA: 3'- aUGCGCCUCGaGUACCuGCGCGaGcu -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 99236 | 0.67 | 0.74708 |
Target: 5'- -cCGCuGcAGgUCGUGGAgGCGCUCGu -3' miRNA: 3'- auGCGcC-UCgAGUACCUgCGCGAGCu -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 98953 | 0.66 | 0.775461 |
Target: 5'- gGCGCGG-GC-CGUGGACgaggcgGCGCUgGu -3' miRNA: 3'- aUGCGCCuCGaGUACCUG------CGCGAgCu -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 98364 | 0.76 | 0.278135 |
Target: 5'- gUGCGCGG-GCUC-UGGGCGCGCgCGc -3' miRNA: 3'- -AUGCGCCuCGAGuACCUGCGCGaGCu -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 98235 | 0.72 | 0.436304 |
Target: 5'- cGCGCggacccucuuauaauGGAggcGCUCGUGcGCGCGCUCGAg -3' miRNA: 3'- aUGCG---------------CCU---CGAGUACcUGCGCGAGCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 96590 | 0.66 | 0.793762 |
Target: 5'- gGCGCGaGGCgccgggCGcGGGCGCGC-CGAc -3' miRNA: 3'- aUGCGCcUCGa-----GUaCCUGCGCGaGCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 94979 | 0.72 | 0.478517 |
Target: 5'- -uCGCGGAGCga---GACGCGCUCGu -3' miRNA: 3'- auGCGCCUCGaguacCUGCGCGAGCu -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 92486 | 0.68 | 0.667669 |
Target: 5'- cUACuCGGAGUUCcUGGcCGCGUUCGu -3' miRNA: 3'- -AUGcGCCUCGAGuACCuGCGCGAGCu -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 90663 | 0.67 | 0.766115 |
Target: 5'- aUGCGCGGGGCggc-GGGC-CGCUUGu -3' miRNA: 3'- -AUGCGCCUCGaguaCCUGcGCGAGCu -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 89326 | 0.69 | 0.657523 |
Target: 5'- cACGCGcGAGCgaggcCAUGG-CGCGUgCGAa -3' miRNA: 3'- aUGCGC-CUCGa----GUACCuGCGCGaGCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 89057 | 0.71 | 0.507101 |
Target: 5'- gUGCGCGGuGGCcuugucgcCGUGGACGCGCgucCGGu -3' miRNA: 3'- -AUGCGCC-UCGa-------GUACCUGCGCGa--GCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 88866 | 0.67 | 0.756652 |
Target: 5'- cGCG-GGAGCUCc-GGGCGCggggGCUCGu -3' miRNA: 3'- aUGCgCCUCGAGuaCCUGCG----CGAGCu -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 86558 | 0.66 | 0.775461 |
Target: 5'- gGCGCcguuccGGcAGCUCucggcgcGGGCGCGCUcCGAg -3' miRNA: 3'- aUGCG------CC-UCGAGua-----CCUGCGCGA-GCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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