miRNA display CGI


Results 61 - 80 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29529 5' -58.1 NC_006151.1 + 86151 0.68 0.667669
Target:  5'- gGCGgGGAGCUCGcgcuGACGCGCg--- -3'
miRNA:   3'- aUGCgCCUCGAGUac--CUGCGCGagcu -5'
29529 5' -58.1 NC_006151.1 + 85802 0.67 0.74708
Target:  5'- cGCGCGuGcagcgccaccAGCUCAaccggugcgccUGGugGCGCUgGAg -3'
miRNA:   3'- aUGCGC-C----------UCGAGU-----------ACCugCGCGAgCU- -5'
29529 5' -58.1 NC_006151.1 + 85634 0.69 0.626995
Target:  5'- cGCGCGGcGC-CAgcggGGACGCGCcCGc -3'
miRNA:   3'- aUGCGCCuCGaGUa---CCUGCGCGaGCu -5'
29529 5' -58.1 NC_006151.1 + 85414 0.68 0.687868
Target:  5'- gGCGCGG-GCuUCGUGGAcgaggucaacCGCGCcgCGGc -3'
miRNA:   3'- aUGCGCCuCG-AGUACCU----------GCGCGa-GCU- -5'
29529 5' -58.1 NC_006151.1 + 84713 0.67 0.7178
Target:  5'- cAgGUGGAGCgCGUGGccgAgGCGCUCGu -3'
miRNA:   3'- aUgCGCCUCGaGUACC---UgCGCGAGCu -5'
29529 5' -58.1 NC_006151.1 + 84399 0.69 0.60665
Target:  5'- gGCGgGGAGCggGUGGGCGCGg-UGAu -3'
miRNA:   3'- aUGCgCCUCGagUACCUGCGCgaGCU- -5'
29529 5' -58.1 NC_006151.1 + 84253 0.69 0.647356
Target:  5'- --aGCGGAGC--AUGcGCGUGCUCGAc -3'
miRNA:   3'- augCGCCUCGagUACcUGCGCGAGCU- -5'
29529 5' -58.1 NC_006151.1 + 83148 0.66 0.814956
Target:  5'- cGCGCcaaagaggguguccuGGAGCUCggGGucguCGCGCgggCGGc -3'
miRNA:   3'- aUGCG---------------CCUCGAGuaCCu---GCGCGa--GCU- -5'
29529 5' -58.1 NC_006151.1 + 81752 0.86 0.06577
Target:  5'- gGCGCGGAGCUgguccgcgggcgccaCcgGGACGCGCUCGGc -3'
miRNA:   3'- aUGCGCCUCGA---------------GuaCCUGCGCGAGCU- -5'
29529 5' -58.1 NC_006151.1 + 81521 0.68 0.697903
Target:  5'- -cCGCGuGAGCUCGgcggccgcgGcGGCGCGCUCc- -3'
miRNA:   3'- auGCGC-CUCGAGUa--------C-CUGCGCGAGcu -5'
29529 5' -58.1 NC_006151.1 + 78812 0.66 0.802701
Target:  5'- -cCGCGGGGCccaguaccuguuUCAgcuguuUGGGCGCGCcUGAc -3'
miRNA:   3'- auGCGCCUCG------------AGU------ACCUGCGCGaGCU- -5'
29529 5' -58.1 NC_006151.1 + 78671 0.67 0.766115
Target:  5'- gGCGCGGGuGC---UGGACGgGCUCu- -3'
miRNA:   3'- aUGCGCCU-CGaguACCUGCgCGAGcu -5'
29529 5' -58.1 NC_006151.1 + 78644 0.67 0.7178
Target:  5'- cGCGUGcGAGCUgGUGGAgGCgGC-CGGg -3'
miRNA:   3'- aUGCGC-CUCGAgUACCUgCG-CGaGCU- -5'
29529 5' -58.1 NC_006151.1 + 77626 0.73 0.406521
Target:  5'- cGCGCGGAGC---UGGACGUGUaCGAc -3'
miRNA:   3'- aUGCGCCUCGaguACCUGCGCGaGCU- -5'
29529 5' -58.1 NC_006151.1 + 75393 0.67 0.756652
Target:  5'- gGCGCGGGGCg---GGuGCGUGCgCGGg -3'
miRNA:   3'- aUGCGCCUCGaguaCC-UGCGCGaGCU- -5'
29529 5' -58.1 NC_006151.1 + 74446 0.69 0.637178
Target:  5'- gACGCGcAGCUCcgGcAgGCGCUCGGc -3'
miRNA:   3'- aUGCGCcUCGAGuaCcUgCGCGAGCU- -5'
29529 5' -58.1 NC_006151.1 + 73058 0.7 0.586379
Target:  5'- gUGCGCGGGGUccgCGUGGcUGUGgUCGAa -3'
miRNA:   3'- -AUGCGCCUCGa--GUACCuGCGCgAGCU- -5'
29529 5' -58.1 NC_006151.1 + 71203 0.71 0.487959
Target:  5'- -uCGCaGGAGCUCguguccgugaccGUGGGCGCGCgcgcCGAc -3'
miRNA:   3'- auGCG-CCUCGAG------------UACCUGCGCGa---GCU- -5'
29529 5' -58.1 NC_006151.1 + 66554 0.69 0.637178
Target:  5'- cGCGCGGccGCgccgcCGUGGACccgGCGCUCGc -3'
miRNA:   3'- aUGCGCCu-CGa----GUACCUG---CGCGAGCu -5'
29529 5' -58.1 NC_006151.1 + 58856 0.75 0.312225
Target:  5'- cGCGUGGAGCUCGcccGGCGCGC-CGGg -3'
miRNA:   3'- aUGCGCCUCGAGUac-CUGCGCGaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.