Results 101 - 105 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29529 | 5' | -58.1 | NC_006151.1 | + | 104162 | 0.67 | 0.7178 |
Target: 5'- -cCGCGGAGCUgcgccccgccgcCGaGcGCGCGCUCGGc -3' miRNA: 3'- auGCGCCUCGA------------GUaCcUGCGCGAGCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 78644 | 0.67 | 0.7178 |
Target: 5'- cGCGUGcGAGCUgGUGGAgGCgGC-CGGg -3' miRNA: 3'- aUGCGC-CUCGAgUACCUgCG-CGaGCU- -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 4611 | 0.67 | 0.7178 |
Target: 5'- -cCGUGGGGCgCGUGGACccgGCGCUgGc -3' miRNA: 3'- auGCGCCUCGaGUACCUG---CGCGAgCu -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 84713 | 0.67 | 0.7178 |
Target: 5'- cAgGUGGAGCgCGUGGccgAgGCGCUCGu -3' miRNA: 3'- aUgCGCCUCGaGUACC---UgCGCGAGCu -5' |
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29529 | 5' | -58.1 | NC_006151.1 | + | 86151 | 0.68 | 0.667669 |
Target: 5'- gGCGgGGAGCUCGcgcuGACGCGCg--- -3' miRNA: 3'- aUGCgCCUCGAGUac--CUGCGCGagcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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