Results 41 - 60 of 105 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29529 | 5' | -58.1 | NC_006151.1 | + | 100604 | 0.66 | 0.811487 |
Target: 5'- -cCGUGGAGCgcuUCcUGG-CGCGCUgGGa -3' miRNA: 3'- auGCGCCUCG---AGuACCuGCGCGAgCU- -5' |
|||||||
29529 | 5' | -58.1 | NC_006151.1 | + | 138724 | 0.66 | 0.811487 |
Target: 5'- cGCGCGcGGgUCGUGuACGCGCgccgCGAc -3' miRNA: 3'- aUGCGCcUCgAGUACcUGCGCGa---GCU- -5' |
|||||||
29529 | 5' | -58.1 | NC_006151.1 | + | 83148 | 0.66 | 0.814956 |
Target: 5'- cGCGCcaaagaggguguccuGGAGCUCggGGucguCGCGCgggCGGc -3' miRNA: 3'- aUGCG---------------CCUCGAGuaCCu---GCGCGa--GCU- -5' |
|||||||
29529 | 5' | -58.1 | NC_006151.1 | + | 99698 | 0.66 | 0.820111 |
Target: 5'- gGCGCcggGGAGaCgccCAUGGAgGCGC-CGAc -3' miRNA: 3'- aUGCG---CCUC-Ga--GUACCUgCGCGaGCU- -5' |
|||||||
29529 | 5' | -58.1 | NC_006151.1 | + | 48948 | 0.66 | 0.820111 |
Target: 5'- cGCGCGcGAGgaCGuguucgccUGGACGCGcCUCa- -3' miRNA: 3'- aUGCGC-CUCgaGU--------ACCUGCGC-GAGcu -5' |
|||||||
29529 | 5' | -58.1 | NC_006151.1 | + | 33945 | 0.66 | 0.793762 |
Target: 5'- cGCGCcccgGGGGCUCGgggcgGGACGCgGCgcccgcgCGGg -3' miRNA: 3'- aUGCG----CCUCGAGUa----CCUGCG-CGa------GCU- -5' |
|||||||
29529 | 5' | -58.1 | NC_006151.1 | + | 102476 | 0.66 | 0.793762 |
Target: 5'- cUACGCGcAGCucucggcgugcuUCAUGGACGcCGCggcgCGGg -3' miRNA: 3'- -AUGCGCcUCG------------AGUACCUGC-GCGa---GCU- -5' |
|||||||
29529 | 5' | -58.1 | NC_006151.1 | + | 20122 | 0.67 | 0.756652 |
Target: 5'- gGCGaCGGGGCUgGgGGGCGgGCgccgCGGg -3' miRNA: 3'- aUGC-GCCUCGAgUaCCUGCgCGa---GCU- -5' |
|||||||
29529 | 5' | -58.1 | NC_006151.1 | + | 75393 | 0.67 | 0.756652 |
Target: 5'- gGCGCGGGGCg---GGuGCGUGCgCGGg -3' miRNA: 3'- aUGCGCCUCGaguaCC-UGCGCGaGCU- -5' |
|||||||
29529 | 5' | -58.1 | NC_006151.1 | + | 88866 | 0.67 | 0.756652 |
Target: 5'- cGCG-GGAGCUCc-GGGCGCggggGCUCGu -3' miRNA: 3'- aUGCgCCUCGAGuaCCUGCG----CGAGCu -5' |
|||||||
29529 | 5' | -58.1 | NC_006151.1 | + | 42792 | 0.67 | 0.766115 |
Target: 5'- cUGgGCGGGGUggcgGGACGCG-UCGAg -3' miRNA: 3'- -AUgCGCCUCGaguaCCUGCGCgAGCU- -5' |
|||||||
29529 | 5' | -58.1 | NC_006151.1 | + | 78671 | 0.67 | 0.766115 |
Target: 5'- gGCGCGGGuGC---UGGACGgGCUCu- -3' miRNA: 3'- aUGCGCCU-CGaguACCUGCgCGAGcu -5' |
|||||||
29529 | 5' | -58.1 | NC_006151.1 | + | 90663 | 0.67 | 0.766115 |
Target: 5'- aUGCGCGGGGCggc-GGGC-CGCUUGu -3' miRNA: 3'- -AUGCGCCUCGaguaCCUGcGCGAGCu -5' |
|||||||
29529 | 5' | -58.1 | NC_006151.1 | + | 99503 | 0.67 | 0.766115 |
Target: 5'- gGCGUGGAGCaCGUGG-UGCGC-Ca- -3' miRNA: 3'- aUGCGCCUCGaGUACCuGCGCGaGcu -5' |
|||||||
29529 | 5' | -58.1 | NC_006151.1 | + | 107099 | 0.67 | 0.766115 |
Target: 5'- cGCGCGu-GCUC-UGGGCGcCGCcCGAg -3' miRNA: 3'- aUGCGCcuCGAGuACCUGC-GCGaGCU- -5' |
|||||||
29529 | 5' | -58.1 | NC_006151.1 | + | 86558 | 0.66 | 0.775461 |
Target: 5'- gGCGCcguuccGGcAGCUCucggcgcGGGCGCGCUcCGAg -3' miRNA: 3'- aUGCG------CC-UCGAGua-----CCUGCGCGA-GCU- -5' |
|||||||
29529 | 5' | -58.1 | NC_006151.1 | + | 98953 | 0.66 | 0.775461 |
Target: 5'- gGCGCGG-GC-CGUGGACgaggcgGCGCUgGu -3' miRNA: 3'- aUGCGCCuCGaGUACCUG------CGCGAgCu -5' |
|||||||
29529 | 5' | -58.1 | NC_006151.1 | + | 17395 | 0.66 | 0.784679 |
Target: 5'- cACGaCGGGGCgCGUGG-CGCGCg--- -3' miRNA: 3'- aUGC-GCCUCGaGUACCuGCGCGagcu -5' |
|||||||
29529 | 5' | -58.1 | NC_006151.1 | + | 139203 | 0.66 | 0.793762 |
Target: 5'- gGCGCuGGAGCUCcUGGcgGCGaCGCUg-- -3' miRNA: 3'- aUGCG-CCUCGAGuACC--UGC-GCGAgcu -5' |
|||||||
29529 | 5' | -58.1 | NC_006151.1 | + | 52964 | 0.66 | 0.793762 |
Target: 5'- gUGCGCGuGcaggcGGCUCAUGuACGCGCU-GAc -3' miRNA: 3'- -AUGCGC-C-----UCGAGUACcUGCGCGAgCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home