miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29529 5' -58.1 NC_006151.1 + 98953 0.66 0.775461
Target:  5'- gGCGCGG-GC-CGUGGACgaggcgGCGCUgGu -3'
miRNA:   3'- aUGCGCCuCGaGUACCUG------CGCGAgCu -5'
29529 5' -58.1 NC_006151.1 + 42792 0.67 0.766115
Target:  5'- cUGgGCGGGGUggcgGGACGCG-UCGAg -3'
miRNA:   3'- -AUgCGCCUCGaguaCCUGCGCgAGCU- -5'
29529 5' -58.1 NC_006151.1 + 78671 0.67 0.766115
Target:  5'- gGCGCGGGuGC---UGGACGgGCUCu- -3'
miRNA:   3'- aUGCGCCU-CGaguACCUGCgCGAGcu -5'
29529 5' -58.1 NC_006151.1 + 90663 0.67 0.766115
Target:  5'- aUGCGCGGGGCggc-GGGC-CGCUUGu -3'
miRNA:   3'- -AUGCGCCUCGaguaCCUGcGCGAGCu -5'
29529 5' -58.1 NC_006151.1 + 99503 0.67 0.766115
Target:  5'- gGCGUGGAGCaCGUGG-UGCGC-Ca- -3'
miRNA:   3'- aUGCGCCUCGaGUACCuGCGCGaGcu -5'
29529 5' -58.1 NC_006151.1 + 107099 0.67 0.766115
Target:  5'- cGCGCGu-GCUC-UGGGCGcCGCcCGAg -3'
miRNA:   3'- aUGCGCcuCGAGuACCUGC-GCGaGCU- -5'
29529 5' -58.1 NC_006151.1 + 88866 0.67 0.756652
Target:  5'- cGCG-GGAGCUCc-GGGCGCggggGCUCGu -3'
miRNA:   3'- aUGCgCCUCGAGuaCCUGCG----CGAGCu -5'
29529 5' -58.1 NC_006151.1 + 75393 0.67 0.756652
Target:  5'- gGCGCGGGGCg---GGuGCGUGCgCGGg -3'
miRNA:   3'- aUGCGCCUCGaguaCC-UGCGCGaGCU- -5'
29529 5' -58.1 NC_006151.1 + 20122 0.67 0.756652
Target:  5'- gGCGaCGGGGCUgGgGGGCGgGCgccgCGGg -3'
miRNA:   3'- aUGC-GCCUCGAgUaCCUGCgCGa---GCU- -5'
29529 5' -58.1 NC_006151.1 + 85802 0.67 0.74708
Target:  5'- cGCGCGuGcagcgccaccAGCUCAaccggugcgccUGGugGCGCUgGAg -3'
miRNA:   3'- aUGCGC-C----------UCGAGU-----------ACCugCGCGAgCU- -5'
29529 5' -58.1 NC_006151.1 + 113052 0.67 0.74708
Target:  5'- gGCgGCGGAGCgCGaGGACGaCGCguaCGAg -3'
miRNA:   3'- aUG-CGCCUCGaGUaCCUGC-GCGa--GCU- -5'
29529 5' -58.1 NC_006151.1 + 99236 0.67 0.74708
Target:  5'- -cCGCuGcAGgUCGUGGAgGCGCUCGu -3'
miRNA:   3'- auGCGcC-UCgAGUACCUgCGCGAGCu -5'
29529 5' -58.1 NC_006151.1 + 105690 0.67 0.74708
Target:  5'- gGCGCGGGGCcgacgccggCGcGGccGCGCGcCUCGAc -3'
miRNA:   3'- aUGCGCCUCGa--------GUaCC--UGCGC-GAGCU- -5'
29529 5' -58.1 NC_006151.1 + 27451 0.67 0.737408
Target:  5'- gACGCGGuGGgUCggGGGCGgGCggUCGAg -3'
miRNA:   3'- aUGCGCC-UCgAGuaCCUGCgCG--AGCU- -5'
29529 5' -58.1 NC_006151.1 + 4245 0.67 0.7178
Target:  5'- aGC-CGGAGCgggCA-GGGCagcagGCGCUCGAg -3'
miRNA:   3'- aUGcGCCUCGa--GUaCCUG-----CGCGAGCU- -5'
29529 5' -58.1 NC_006151.1 + 84713 0.67 0.7178
Target:  5'- cAgGUGGAGCgCGUGGccgAgGCGCUCGu -3'
miRNA:   3'- aUgCGCCUCGaGUACC---UgCGCGAGCu -5'
29529 5' -58.1 NC_006151.1 + 4611 0.67 0.7178
Target:  5'- -cCGUGGGGCgCGUGGACccgGCGCUgGc -3'
miRNA:   3'- auGCGCCUCGaGUACCUG---CGCGAgCu -5'
29529 5' -58.1 NC_006151.1 + 78644 0.67 0.7178
Target:  5'- cGCGUGcGAGCUgGUGGAgGCgGC-CGGg -3'
miRNA:   3'- aUGCGC-CUCGAgUACCUgCG-CGaGCU- -5'
29529 5' -58.1 NC_006151.1 + 104162 0.67 0.7178
Target:  5'- -cCGCGGAGCUgcgccccgccgcCGaGcGCGCGCUCGGc -3'
miRNA:   3'- auGCGCCUCGA------------GUaCcUGCGCGAGCU- -5'
29529 5' -58.1 NC_006151.1 + 105510 0.68 0.707883
Target:  5'- gUGCGC-GAGCUCGaccgcaUGGcgGCGCGCaUCGGg -3'
miRNA:   3'- -AUGCGcCUCGAGU------ACC--UGCGCG-AGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.