Results 41 - 57 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29532 | 3' | -55.1 | NC_006151.1 | + | 122784 | 0.66 | 0.927836 |
Target: 5'- cGUGgGCGGCUGCGCgGcCUCGccCGAc -3' miRNA: 3'- -CGCaUGUCGACGCGgUcGAGCaaGCU- -5' |
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29532 | 3' | -55.1 | NC_006151.1 | + | 137006 | 0.66 | 0.927836 |
Target: 5'- cGCGcACGGCgcuggGCGCCcuGCUCGgccugcCGGa -3' miRNA: 3'- -CGCaUGUCGa----CGCGGu-CGAGCaa----GCU- -5' |
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29532 | 3' | -55.1 | NC_006151.1 | + | 66552 | 0.66 | 0.916098 |
Target: 5'- cGCGcGCGGCcGCGCCGccguggacccggcGCUCGcgCGc -3' miRNA: 3'- -CGCaUGUCGaCGCGGU-------------CGAGCaaGCu -5' |
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29532 | 3' | -55.1 | NC_006151.1 | + | 21599 | 0.66 | 0.911344 |
Target: 5'- gGCGUACGGCgugGCGgCGGCguaggcccgcgggagCGUcCGGc -3' miRNA: 3'- -CGCAUGUCGa--CGCgGUCGa--------------GCAaGCU- -5' |
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29532 | 3' | -55.1 | NC_006151.1 | + | 84142 | 0.68 | 0.862558 |
Target: 5'- aGCGgcacgaGgGGCUGUGCCAGCUgCGcgacUCGGc -3' miRNA: 3'- -CGCa-----UgUCGACGCGGUCGA-GCa---AGCU- -5' |
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29532 | 3' | -55.1 | NC_006151.1 | + | 50463 | 0.67 | 0.870119 |
Target: 5'- cGCGgGC-GCUcGCGCCAGCgCGgcgCGAc -3' miRNA: 3'- -CGCaUGuCGA-CGCGGUCGaGCaa-GCU- -5' |
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29532 | 3' | -55.1 | NC_006151.1 | + | 3697 | 0.67 | 0.877462 |
Target: 5'- gGCGcGCGGCgcuucuucuUGCGCC-GCUCGggCGc -3' miRNA: 3'- -CGCaUGUCG---------ACGCGGuCGAGCaaGCu -5' |
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29532 | 3' | -55.1 | NC_006151.1 | + | 90914 | 0.67 | 0.884582 |
Target: 5'- aGCGUcaGCAGCccgUGCGCCGuCUCGagCGu -3' miRNA: 3'- -CGCA--UGUCG---ACGCGGUcGAGCaaGCu -5' |
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29532 | 3' | -55.1 | NC_006151.1 | + | 71851 | 0.67 | 0.884582 |
Target: 5'- gGCGUACcgucCUGCGCCcccagcgucAGCagGUUCGGg -3' miRNA: 3'- -CGCAUGuc--GACGCGG---------UCGagCAAGCU- -5' |
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29532 | 3' | -55.1 | NC_006151.1 | + | 59121 | 0.67 | 0.891474 |
Target: 5'- gGCGUACAGCUGCcgGUgGGUggcgcccgCGggCGGg -3' miRNA: 3'- -CGCAUGUCGACG--CGgUCGa-------GCaaGCU- -5' |
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29532 | 3' | -55.1 | NC_006151.1 | + | 139529 | 0.67 | 0.891474 |
Target: 5'- aGCG-GCAGCgagGCGuCCAGgUCGgggagCGAg -3' miRNA: 3'- -CGCaUGUCGa--CGC-GGUCgAGCaa---GCU- -5' |
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29532 | 3' | -55.1 | NC_006151.1 | + | 85804 | 0.67 | 0.891474 |
Target: 5'- cGCGUGCAGC-GCcaCCAGCUCaacCGGu -3' miRNA: 3'- -CGCAUGUCGaCGc-GGUCGAGcaaGCU- -5' |
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29532 | 3' | -55.1 | NC_006151.1 | + | 128220 | 0.67 | 0.891474 |
Target: 5'- gGCGUGCgacgAGCUcguggGCGCCAGgUCGc-CGAu -3' miRNA: 3'- -CGCAUG----UCGA-----CGCGGUCgAGCaaGCU- -5' |
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29532 | 3' | -55.1 | NC_006151.1 | + | 35090 | 0.67 | 0.891474 |
Target: 5'- cGCGUGCcgAGCaUGCGCCucgcGCcCGcgCGAg -3' miRNA: 3'- -CGCAUG--UCG-ACGCGGu---CGaGCaaGCU- -5' |
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29532 | 3' | -55.1 | NC_006151.1 | + | 71327 | 0.66 | 0.910739 |
Target: 5'- aGCGcgGCGGCUGCGCCGacgacCUCGccgUGGc -3' miRNA: 3'- -CGCa-UGUCGACGCGGUc----GAGCaa-GCU- -5' |
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29532 | 3' | -55.1 | NC_006151.1 | + | 97373 | 0.66 | 0.910739 |
Target: 5'- gGCGggcGCGGCggggGCGUCGGcCUCGUcCGu -3' miRNA: 3'- -CGCa--UGUCGa---CGCGGUC-GAGCAaGCu -5' |
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29532 | 3' | -55.1 | NC_006151.1 | + | 81195 | 0.66 | 0.933048 |
Target: 5'- aGCGUguacgccgggccGCAGUccggGCGCCGGCgCGUgaacaCGAa -3' miRNA: 3'- -CGCA------------UGUCGa---CGCGGUCGaGCAa----GCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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