miRNA display CGI


Results 1 - 20 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29536 5' -56.7 NC_006151.1 + 22119 0.66 0.871934
Target:  5'- ---cGUucAGCAGCCGGucCACCUgcgggucggagaucaGCGCCa -3'
miRNA:   3'- auaaCA--UUGUCGGCCc-GUGGG---------------CGCGG- -5'
29536 5' -56.7 NC_006151.1 + 70991 0.66 0.868967
Target:  5'- ---aGgacuCGGCCguggccaucguGGGCGCCaUGCGCCg -3'
miRNA:   3'- auaaCauu-GUCGG-----------CCCGUGG-GCGCGG- -5'
29536 5' -56.7 NC_006151.1 + 72863 0.66 0.868967
Target:  5'- ---cGUcGGCgaGGCgGcGGCGCCCGUGUCg -3'
miRNA:   3'- auaaCA-UUG--UCGgC-CCGUGGGCGCGG- -5'
29536 5' -56.7 NC_006151.1 + 124487 0.66 0.868967
Target:  5'- --cUG-AACGcGCUcGGCACCCGCGgCu -3'
miRNA:   3'- auaACaUUGU-CGGcCCGUGGGCGCgG- -5'
29536 5' -56.7 NC_006151.1 + 77052 0.66 0.868967
Target:  5'- --------gGGCCGGaGCGCgaGCGCCa -3'
miRNA:   3'- auaacauugUCGGCC-CGUGggCGCGG- -5'
29536 5' -56.7 NC_006151.1 + 93370 0.66 0.868967
Target:  5'- ----aUGACGGCCGGagGCgCGCGCUa -3'
miRNA:   3'- auaacAUUGUCGGCCcgUGgGCGCGG- -5'
29536 5' -56.7 NC_006151.1 + 138736 0.66 0.868967
Target:  5'- --gUGUAcGCGcGCCGcGaCugCCGCGCCu -3'
miRNA:   3'- auaACAU-UGU-CGGCcC-GugGGCGCGG- -5'
29536 5' -56.7 NC_006151.1 + 4324 0.66 0.868967
Target:  5'- ------cGCGGCCGGGCugC-GCGgCg -3'
miRNA:   3'- auaacauUGUCGGCCCGugGgCGCgG- -5'
29536 5' -56.7 NC_006151.1 + 129493 0.66 0.868967
Target:  5'- ---cGgagGGCAGCgCGGGCGCgaugacgagCCGCuuGCCg -3'
miRNA:   3'- auaaCa--UUGUCG-GCCCGUG---------GGCG--CGG- -5'
29536 5' -56.7 NC_006151.1 + 33190 0.66 0.86672
Target:  5'- --gUGggggGAUGGCCGgccGGCGCCCccggagcacgcgggGCGCCc -3'
miRNA:   3'- auaACa---UUGUCGGC---CCGUGGG--------------CGCGG- -5'
29536 5' -56.7 NC_006151.1 + 49340 0.66 0.8614
Target:  5'- ---aGgccuGCGcGCCGG--ACCCGCGCCg -3'
miRNA:   3'- auaaCau--UGU-CGGCCcgUGGGCGCGG- -5'
29536 5' -56.7 NC_006151.1 + 128962 0.66 0.8614
Target:  5'- ---gGUAGCgccaguagguGGCCa-GCACCgCGCGCCa -3'
miRNA:   3'- auaaCAUUG----------UCGGccCGUGG-GCGCGG- -5'
29536 5' -56.7 NC_006151.1 + 21108 0.66 0.8614
Target:  5'- -----gGGgAGCCGGGuCACgucgCGCGCCa -3'
miRNA:   3'- auaacaUUgUCGGCCC-GUGg---GCGCGG- -5'
29536 5' -56.7 NC_006151.1 + 66224 0.66 0.8614
Target:  5'- ---------uGUCGGcGCGCCCGCGCa -3'
miRNA:   3'- auaacauuguCGGCC-CGUGGGCGCGg -5'
29536 5' -56.7 NC_006151.1 + 93612 0.66 0.8614
Target:  5'- --cUGcAGCAGCCGG---UCCGCGCUg -3'
miRNA:   3'- auaACaUUGUCGGCCcguGGGCGCGG- -5'
29536 5' -56.7 NC_006151.1 + 100014 0.66 0.8614
Target:  5'- ---gGUGGCGcacgcgcgcaacGUCGaGGCGCUCGCGCa -3'
miRNA:   3'- auaaCAUUGU------------CGGC-CCGUGGGCGCGg -5'
29536 5' -56.7 NC_006151.1 + 72057 0.66 0.8614
Target:  5'- ---cGUcucGGCGGCgCGcGCcaccACCCGCGCCg -3'
miRNA:   3'- auaaCA---UUGUCG-GCcCG----UGGGCGCGG- -5'
29536 5' -56.7 NC_006151.1 + 131841 0.66 0.860632
Target:  5'- ---gGUGAUgAGCgGGGCggccgagACgCGCGCCg -3'
miRNA:   3'- auaaCAUUG-UCGgCCCG-------UGgGCGCGG- -5'
29536 5' -56.7 NC_006151.1 + 60190 0.66 0.859089
Target:  5'- ---gGUucAGCAGCaCGGGCgugaagaugggcucGCCgcgCGCGCCg -3'
miRNA:   3'- auaaCA--UUGUCG-GCCCG--------------UGG---GCGCGG- -5'
29536 5' -56.7 NC_006151.1 + 66556 0.66 0.856759
Target:  5'- ------cGCGGCCGcgccgccguggacccGGCGCUCGCGCg -3'
miRNA:   3'- auaacauUGUCGGC---------------CCGUGGGCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.