miRNA display CGI


Results 1 - 20 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29536 5' -56.7 NC_006151.1 + 2280 0.73 0.465602
Target:  5'- ---cGgc-CGGCgGGGCGCCCGCGgCg -3'
miRNA:   3'- auaaCauuGUCGgCCCGUGGGCGCgG- -5'
29536 5' -56.7 NC_006151.1 + 2478 0.67 0.793901
Target:  5'- gGUUGgccgcGCGGugcCCGaaggcGGCGCCCGCGUCa -3'
miRNA:   3'- aUAACau---UGUC---GGC-----CCGUGGGCGCGG- -5'
29536 5' -56.7 NC_006151.1 + 2773 0.71 0.573767
Target:  5'- ------cACGGCCGcgcggagcucgcGGCACCCGgGCCa -3'
miRNA:   3'- auaacauUGUCGGC------------CCGUGGGCgCGG- -5'
29536 5' -56.7 NC_006151.1 + 2856 0.69 0.685665
Target:  5'- ---gGUAgucccccACGGCCGGGCcguCCgCGgGCCa -3'
miRNA:   3'- auaaCAU-------UGUCGGCCCGu--GG-GCgCGG- -5'
29536 5' -56.7 NC_006151.1 + 2911 0.7 0.625059
Target:  5'- -----gAugAGCCGGcGcCGCgCCGCGCCg -3'
miRNA:   3'- auaacaUugUCGGCC-C-GUG-GGCGCGG- -5'
29536 5' -56.7 NC_006151.1 + 2964 0.68 0.775379
Target:  5'- ---cGgcgaAGCCGaGGU-CCCGCGCCg -3'
miRNA:   3'- auaaCauugUCGGC-CCGuGGGCGCGG- -5'
29536 5' -56.7 NC_006151.1 + 3008 0.7 0.624029
Target:  5'- cGUUGaGGCGGCCgaugucgGGGCGCCCG-GUCc -3'
miRNA:   3'- aUAACaUUGUCGG-------CCCGUGGGCgCGG- -5'
29536 5' -56.7 NC_006151.1 + 3283 0.68 0.745671
Target:  5'- --aUGUGcgccaggGCGGCCGGGUcgaaggugagcGCCgGgCGCCa -3'
miRNA:   3'- auaACAU-------UGUCGGCCCG-----------UGGgC-GCGG- -5'
29536 5' -56.7 NC_006151.1 + 3857 0.69 0.706953
Target:  5'- ---cGgggaGGCCggaggGGGCGCCCGcCGCCg -3'
miRNA:   3'- auaaCauugUCGG-----CCCGUGGGC-GCGG- -5'
29536 5' -56.7 NC_006151.1 + 3905 0.69 0.686684
Target:  5'- -----cGACgaGGCCGGGCugCuCGgGCCa -3'
miRNA:   3'- auaacaUUG--UCGGCCCGugG-GCgCGG- -5'
29536 5' -56.7 NC_006151.1 + 3934 0.71 0.572749
Target:  5'- ---gGggGCAgGCCGGGCgcgggcuccgcggGCCCGgGCCg -3'
miRNA:   3'- auaaCauUGU-CGGCCCG-------------UGGGCgCGG- -5'
29536 5' -56.7 NC_006151.1 + 4324 0.66 0.868967
Target:  5'- ------cGCGGCCGGGCugC-GCGgCg -3'
miRNA:   3'- auaacauUGUCGGCCCGugGgCGCgG- -5'
29536 5' -56.7 NC_006151.1 + 5114 0.69 0.680564
Target:  5'- ---gGUGGCGGCCcggcgcgggcgagugGGGCGCCgG-GCCg -3'
miRNA:   3'- auaaCAUUGUCGG---------------CCCGUGGgCgCGG- -5'
29536 5' -56.7 NC_006151.1 + 5340 0.67 0.802945
Target:  5'- ------cGCGGCggaGGGCGCCCucuccggcgcgGCGCCg -3'
miRNA:   3'- auaacauUGUCGg--CCCGUGGG-----------CGCGG- -5'
29536 5' -56.7 NC_006151.1 + 5499 0.66 0.853623
Target:  5'- gGUUGgaggaGACGGggcuCCGGGCGCCaaGCgGCCg -3'
miRNA:   3'- aUAACa----UUGUC----GGCCCGUGGg-CG-CGG- -5'
29536 5' -56.7 NC_006151.1 + 5729 0.71 0.583969
Target:  5'- ---gGUGGC-GCCGGGguCcgaggCCGCGCCg -3'
miRNA:   3'- auaaCAUUGuCGGCCCguG-----GGCGCGG- -5'
29536 5' -56.7 NC_006151.1 + 5920 0.7 0.625059
Target:  5'- ---gGUcGGCGGCCGGG-GCCCGgaGCCg -3'
miRNA:   3'- auaaCA-UUGUCGGCCCgUGGGCg-CGG- -5'
29536 5' -56.7 NC_006151.1 + 6014 0.76 0.345132
Target:  5'- -----cGGCGGCCGGGgACCCGgGCUc -3'
miRNA:   3'- auaacaUUGUCGGCCCgUGGGCgCGG- -5'
29536 5' -56.7 NC_006151.1 + 6389 0.71 0.594207
Target:  5'- --cUG-AGCgaGGCCGGGCGCCgaGCGCg -3'
miRNA:   3'- auaACaUUG--UCGGCCCGUGGg-CGCGg -5'
29536 5' -56.7 NC_006151.1 + 7635 0.66 0.853623
Target:  5'- ------cGCGGUCGcccCACCCGCGCCu -3'
miRNA:   3'- auaacauUGUCGGCcc-GUGGGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.