miRNA display CGI


Results 21 - 40 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29539 5' -61.8 NC_006151.1 + 99219 0.66 0.687852
Target:  5'- uGCaGGCCagcgCCUCGCCGCUGcAGGucguggaggcGCUCg -3'
miRNA:   3'- -CG-CCGGaa--GGGGCGGCGGC-UCU----------UGGG- -5'
29539 5' -61.8 NC_006151.1 + 107364 0.66 0.687852
Target:  5'- cGCGGCCccgaUCCCCggGCUGCCc----CCCg -3'
miRNA:   3'- -CGCCGGa---AGGGG--CGGCGGcucuuGGG- -5'
29539 5' -61.8 NC_006151.1 + 112609 0.66 0.687852
Target:  5'- cGCGGCg--CCgCUGgCGCUGGacGAGCCCu -3'
miRNA:   3'- -CGCCGgaaGG-GGCgGCGGCU--CUUGGG- -5'
29539 5' -61.8 NC_006151.1 + 122347 0.66 0.687852
Target:  5'- cGUGGCCaagaaCCUGCCGCaCGugcacGGGCUCg -3'
miRNA:   3'- -CGCCGGaag--GGGCGGCG-GCu----CUUGGG- -5'
29539 5' -61.8 NC_006151.1 + 130420 0.66 0.687852
Target:  5'- cGCGGgCg-CgCCGaCCGUCGAGGACUg -3'
miRNA:   3'- -CGCCgGaaGgGGC-GGCGGCUCUUGGg -5'
29539 5' -61.8 NC_006151.1 + 134725 0.66 0.687852
Target:  5'- cGUGGCCUUCgCgcgggacuuuguCGCC-CCGAGcagcgcgcgcggGGCCCg -3'
miRNA:   3'- -CGCCGGAAGgG------------GCGGcGGCUC------------UUGGG- -5'
29539 5' -61.8 NC_006151.1 + 136815 0.66 0.687852
Target:  5'- cGCGGCCga-CgCGCCGCgCGGGcuCUg -3'
miRNA:   3'- -CGCCGGaagGgGCGGCG-GCUCuuGGg -5'
29539 5' -61.8 NC_006151.1 + 13031 0.66 0.686887
Target:  5'- cGCGGCCgacccggcggUgacccauccccaCCCCGCCGCgccccuuuuuccuCGAGAGCg- -3'
miRNA:   3'- -CGCCGGa---------A------------GGGGCGGCG-------------GCUCUUGgg -5'
29539 5' -61.8 NC_006151.1 + 133442 0.66 0.67818
Target:  5'- gGCGGCCgaggcgcUCUUgGCCccgGUCGAG-GCCCg -3'
miRNA:   3'- -CGCCGGa------AGGGgCGG---CGGCUCuUGGG- -5'
29539 5' -61.8 NC_006151.1 + 118478 0.66 0.67818
Target:  5'- cGCGGCCUaCCUCGUggugGCCGAcGGCUUc -3'
miRNA:   3'- -CGCCGGAaGGGGCGg---CGGCUcUUGGG- -5'
29539 5' -61.8 NC_006151.1 + 99595 0.66 0.67818
Target:  5'- gGCGGCCgagCgCCG-CGCCGGGcuGGCgCa -3'
miRNA:   3'- -CGCCGGaa-GgGGCgGCGGCUC--UUGgG- -5'
29539 5' -61.8 NC_006151.1 + 83107 0.66 0.67818
Target:  5'- aGCGGgCg-CCCgCGCCgGUCGcAGAGCUCg -3'
miRNA:   3'- -CGCCgGaaGGG-GCGG-CGGC-UCUUGGG- -5'
29539 5' -61.8 NC_006151.1 + 53412 0.66 0.67818
Target:  5'- aCGGCCgugagCaggUGCCGcCCGAGcAGCCCg -3'
miRNA:   3'- cGCCGGaa---Ggg-GCGGC-GGCUC-UUGGG- -5'
29539 5' -61.8 NC_006151.1 + 137043 0.66 0.67818
Target:  5'- cGCGuGCC--CCCCGgCGCCGGuGuACCg -3'
miRNA:   3'- -CGC-CGGaaGGGGCgGCGGCU-CuUGGg -5'
29539 5' -61.8 NC_006151.1 + 3116 0.66 0.67818
Target:  5'- cGCGGCgCgggUCCCagGCCggGCgCGGGGcGCCCu -3'
miRNA:   3'- -CGCCG-Ga--AGGGg-CGG--CG-GCUCU-UGGG- -5'
29539 5' -61.8 NC_006151.1 + 56427 0.66 0.67818
Target:  5'- cGCGGCCcaccUCagCCCGCuCGaCGAGAcgcgcgugcuGCCCc -3'
miRNA:   3'- -CGCCGGa---AG--GGGCG-GCgGCUCU----------UGGG- -5'
29539 5' -61.8 NC_006151.1 + 94408 0.66 0.67818
Target:  5'- uGCaGaCCaggUCCCCGCCGgUGAacACCCc -3'
miRNA:   3'- -CGcC-GGa--AGGGGCGGCgGCUcuUGGG- -5'
29539 5' -61.8 NC_006151.1 + 99265 0.66 0.67818
Target:  5'- cGCGGgCUUCaCgCGCCGCCacugcGACCUc -3'
miRNA:   3'- -CGCCgGAAG-GgGCGGCGGcuc--UUGGG- -5'
29539 5' -61.8 NC_006151.1 + 104241 0.66 0.67818
Target:  5'- --cGCCUUCaaCCCGCaccuGcCCGAGAACgCCg -3'
miRNA:   3'- cgcCGGAAG--GGGCGg---C-GGCUCUUG-GG- -5'
29539 5' -61.8 NC_006151.1 + 11382 0.66 0.67818
Target:  5'- cGCcGCCUcuuccccccUCCuCCGCCGCCGcc-GCCa -3'
miRNA:   3'- -CGcCGGA---------AGG-GGCGGCGGCucuUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.