miRNA display CGI


Results 81 - 100 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29540 5' -58.5 NC_006151.1 + 58373 0.67 0.750258
Target:  5'- cGUCGUGaucucgacggagaGCGCGGCgcaGCCGGcCAUgGCg -3'
miRNA:   3'- -CGGCAC-------------CGCGCCGag-CGGUU-GUAgUG- -5'
29540 5' -58.5 NC_006151.1 + 70998 0.67 0.751211
Target:  5'- gGCCGUGGCcaucGUGGg-CGCCAuGCGcCGCg -3'
miRNA:   3'- -CGGCACCG----CGCCgaGCGGU-UGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 79115 0.67 0.751211
Target:  5'- cGUCGUGGCugggccaCGGC-CGCCccauCGUCGCc -3'
miRNA:   3'- -CGGCACCGc------GCCGaGCGGuu--GUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 123215 0.67 0.751211
Target:  5'- -aCGUGGCgGUGGC-CGCCGGguUcCGCg -3'
miRNA:   3'- cgGCACCG-CGCCGaGCGGUUguA-GUG- -5'
29540 5' -58.5 NC_006151.1 + 127858 0.67 0.751211
Target:  5'- cGCCGgagggGGCGCcGCcCGCCGcCGUcCACc -3'
miRNA:   3'- -CGGCa----CCGCGcCGaGCGGUuGUA-GUG- -5'
29540 5' -58.5 NC_006151.1 + 78835 0.67 0.751211
Target:  5'- aGCUGUuugGGCGCGcCUgacccgCGCCAACAUCu- -3'
miRNA:   3'- -CGGCA---CCGCGCcGA------GCGGUUGUAGug -5'
29540 5' -58.5 NC_006151.1 + 95394 0.67 0.751211
Target:  5'- cGCCG-GGCGUGGCcCGCUg----CACg -3'
miRNA:   3'- -CGGCaCCGCGCCGaGCGGuuguaGUG- -5'
29540 5' -58.5 NC_006151.1 + 97992 0.67 0.751211
Target:  5'- uGCCGggcGGCGUGGC-CGCguaGGCggCGCc -3'
miRNA:   3'- -CGGCa--CCGCGCCGaGCGg--UUGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 98648 0.67 0.751211
Target:  5'- gGCCcuggcgGGCGCGcGCUCcGCCGACG--ACg -3'
miRNA:   3'- -CGGca----CCGCGC-CGAG-CGGUUGUagUG- -5'
29540 5' -58.5 NC_006151.1 + 90981 0.68 0.692529
Target:  5'- cGCCcUGGCGCcGCUgGCUGGCG-CGCu -3'
miRNA:   3'- -CGGcACCGCGcCGAgCGGUUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 131781 0.68 0.692529
Target:  5'- gGCCGcgGGCGCcGCcgUCGUCAGCG-CGCc -3'
miRNA:   3'- -CGGCa-CCGCGcCG--AGCGGUUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 133466 0.68 0.701491
Target:  5'- gGUCGaGGCccgcgagGCGGC-CGCgGGCGUCACc -3'
miRNA:   3'- -CGGCaCCG-------CGCCGaGCGgUUGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 4220 0.68 0.702484
Target:  5'- gGCCGgGGCGCgGGCgggCGCgGGCAgccggaGCg -3'
miRNA:   3'- -CGGCaCCGCG-CCGa--GCGgUUGUag----UG- -5'
29540 5' -58.5 NC_006151.1 + 130890 0.68 0.702484
Target:  5'- gGCgGUGGagGCGGCggccgUCGCCGuCGUCGg -3'
miRNA:   3'- -CGgCACCg-CGCCG-----AGCGGUuGUAGUg -5'
29540 5' -58.5 NC_006151.1 + 36661 0.68 0.702484
Target:  5'- cGCCGgagGGgacCGCGG-UCGUCAcCAUCACc -3'
miRNA:   3'- -CGGCa--CC---GCGCCgAGCGGUuGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 129005 0.68 0.702484
Target:  5'- cGCCGUGaugcccuucaGCGCGGC--GUCGGCcgCGCg -3'
miRNA:   3'- -CGGCAC----------CGCGCCGagCGGUUGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 131868 0.68 0.702484
Target:  5'- cGCCGgcGGCGuCGGgUCGCagGGCAgCACg -3'
miRNA:   3'- -CGGCa-CCGC-GCCgAGCGg-UUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 75427 0.68 0.702484
Target:  5'- cCCGgcgugGGCGCGaaGCU-GCCGGCGUgGCg -3'
miRNA:   3'- cGGCa----CCGCGC--CGAgCGGUUGUAgUG- -5'
29540 5' -58.5 NC_006151.1 + 114911 0.68 0.702484
Target:  5'- cCCG-GGCGCacGGC-C-CCGGCGUCGCg -3'
miRNA:   3'- cGGCaCCGCG--CCGaGcGGUUGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 103821 0.68 0.692529
Target:  5'- gGCCGUGGCgGCGGC-CGUgGAgAUg-- -3'
miRNA:   3'- -CGGCACCG-CGCCGaGCGgUUgUAgug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.