miRNA display CGI


Results 101 - 120 of 237 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29540 5' -58.5 NC_006151.1 + 109248 0.68 0.672479
Target:  5'- cGCCGcGGUcuccgcugGCGGC-C-CCGACGUCGCu -3'
miRNA:   3'- -CGGCaCCG--------CGCCGaGcGGUUGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 136590 0.68 0.666436
Target:  5'- aCCGc-GCGCGGCUCcgcgagcaccuggacGCCGucaACGUCACg -3'
miRNA:   3'- cGGCacCGCGCCGAG---------------CGGU---UGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 71094 0.68 0.652301
Target:  5'- cGCCGcgGGCGCGGg-CGCCGug--CGCu -3'
miRNA:   3'- -CGGCa-CCGCGCCgaGCGGUuguaGUG- -5'
29540 5' -58.5 NC_006151.1 + 122677 0.68 0.652301
Target:  5'- cGCCGaggUGcGCGCGGCg-GCCGugGagcUCGCg -3'
miRNA:   3'- -CGGC---AC-CGCGCCGagCGGUugU---AGUG- -5'
29540 5' -58.5 NC_006151.1 + 103937 0.68 0.69153
Target:  5'- aGCCGcagcugcagaagaUGGCgcucGCGGCgCGCCAgcGCGUCGg -3'
miRNA:   3'- -CGGC-------------ACCG----CGCCGaGCGGU--UGUAGUg -5'
29540 5' -58.5 NC_006151.1 + 63749 0.68 0.692529
Target:  5'- gGCgCGUcGGCGgGGCguccucggCGCCcccGCGUCGCc -3'
miRNA:   3'- -CG-GCA-CCGCgCCGa-------GCGGu--UGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 114911 0.68 0.702484
Target:  5'- cCCG-GGCGCacGGC-C-CCGGCGUCGCg -3'
miRNA:   3'- cGGCaCCGCG--CCGaGcGGUUGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 75427 0.68 0.702484
Target:  5'- cCCGgcgugGGCGCGaaGCU-GCCGGCGUgGCg -3'
miRNA:   3'- cGGCa----CCGCGC--CGAgCGGUUGUAgUG- -5'
29540 5' -58.5 NC_006151.1 + 131868 0.68 0.702484
Target:  5'- cGCCGgcGGCGuCGGgUCGCagGGCAgCACg -3'
miRNA:   3'- -CGGCa-CCGC-GCCgAGCGg-UUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 129005 0.68 0.702484
Target:  5'- cGCCGUGaugcccuucaGCGCGGC--GUCGGCcgCGCg -3'
miRNA:   3'- -CGGCAC----------CGCGCCGagCGGUUGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 36661 0.68 0.702484
Target:  5'- cGCCGgagGGgacCGCGG-UCGUCAcCAUCACc -3'
miRNA:   3'- -CGGCa--CC---GCGCCgAGCGGUuGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 130890 0.68 0.702484
Target:  5'- gGCgGUGGagGCGGCggccgUCGCCGuCGUCGg -3'
miRNA:   3'- -CGgCACCg-CGCCG-----AGCGGUuGUAGUg -5'
29540 5' -58.5 NC_006151.1 + 4220 0.68 0.702484
Target:  5'- gGCCGgGGCGCgGGCgggCGCgGGCAgccggaGCg -3'
miRNA:   3'- -CGGCaCCGCG-CCGa--GCGgUUGUag----UG- -5'
29540 5' -58.5 NC_006151.1 + 133466 0.68 0.701491
Target:  5'- gGUCGaGGCccgcgagGCGGC-CGCgGGCGUCACc -3'
miRNA:   3'- -CGGCaCCG-------CGCCGaGCGgUUGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 131781 0.68 0.692529
Target:  5'- gGCCGcgGGCGCcGCcgUCGUCAGCG-CGCc -3'
miRNA:   3'- -CGGCa-CCGCGcCG--AGCGGUUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 90981 0.68 0.692529
Target:  5'- cGCCcUGGCGCcGCUgGCUGGCG-CGCu -3'
miRNA:   3'- -CGGcACCGCGcCGAgCGGUUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 103821 0.68 0.692529
Target:  5'- gGCCGUGGCgGCGGC-CGUgGAgAUg-- -3'
miRNA:   3'- -CGGCACCG-CGCCGaGCGgUUgUAgug -5'
29540 5' -58.5 NC_006151.1 + 39167 0.68 0.692529
Target:  5'- gGCCucucGGCGCuGCUCGCCGcCuUCGCc -3'
miRNA:   3'- -CGGca--CCGCGcCGAGCGGUuGuAGUG- -5'
29540 5' -58.5 NC_006151.1 + 73040 0.68 0.692529
Target:  5'- gGCgGUGGCGCGGUgggggUGCgCGGgGUcCGCg -3'
miRNA:   3'- -CGgCACCGCGCCGa----GCG-GUUgUA-GUG- -5'
29540 5' -58.5 NC_006151.1 + 31611 0.68 0.692529
Target:  5'- cGCCGccugGGCGgGGaugccgCGCCGGCAcgagCGCa -3'
miRNA:   3'- -CGGCa---CCGCgCCga----GCGGUUGUa---GUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.