Results 121 - 140 of 237 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29540 | 5' | -58.5 | NC_006151.1 | + | 31611 | 0.68 | 0.692529 |
Target: 5'- cGCCGccugGGCGgGGaugccgCGCCGGCAcgagCGCa -3' miRNA: 3'- -CGGCa---CCGCgCCga----GCGGUUGUa---GUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 73040 | 0.68 | 0.692529 |
Target: 5'- gGCgGUGGCGCGGUgggggUGCgCGGgGUcCGCg -3' miRNA: 3'- -CGgCACCGCGCCGa----GCG-GUUgUA-GUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 39167 | 0.68 | 0.692529 |
Target: 5'- gGCCucucGGCGCuGCUCGCCGcCuUCGCc -3' miRNA: 3'- -CGGca--CCGCGcCGAGCGGUuGuAGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 103821 | 0.68 | 0.692529 |
Target: 5'- gGCCGUGGCgGCGGC-CGUgGAgAUg-- -3' miRNA: 3'- -CGGCACCG-CGCCGaGCGgUUgUAgug -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 90981 | 0.68 | 0.692529 |
Target: 5'- cGCCcUGGCGCcGCUgGCUGGCG-CGCu -3' miRNA: 3'- -CGGcACCGCGcCGAgCGGUUGUaGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 83231 | 0.69 | 0.63206 |
Target: 5'- gGUCGaaGCGCGGCgcgCGCCcccaguCGUCGCg -3' miRNA: 3'- -CGGCacCGCGCCGa--GCGGuu----GUAGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 60629 | 0.69 | 0.63206 |
Target: 5'- cGCCGUcgucggGGCGgGGCUC-CCGGCccgCGCc -3' miRNA: 3'- -CGGCA------CCGCgCCGAGcGGUUGua-GUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 54719 | 0.69 | 0.63206 |
Target: 5'- gGCCuggacgagGUGGC-CGaGCUCGCCGaggccaugcgcgGCGUCACc -3' miRNA: 3'- -CGG--------CACCGcGC-CGAGCGGU------------UGUAGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 118214 | 0.69 | 0.631047 |
Target: 5'- gGCCGUgguggcgGGCGCccggaccaccgGGCUCGgCGGCGggcUCACg -3' miRNA: 3'- -CGGCA-------CCGCG-----------CCGAGCgGUUGU---AGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 122482 | 0.69 | 0.621935 |
Target: 5'- gGCCGgggacgcgGGCGagaCGGCgCGCCGGCG-CGCg -3' miRNA: 3'- -CGGCa-------CCGC---GCCGaGCGGUUGUaGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 115947 | 0.69 | 0.621935 |
Target: 5'- cGCCG-GGCGC-GCgagCGCgAGCGUCGu -3' miRNA: 3'- -CGGCaCCGCGcCGa--GCGgUUGUAGUg -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 100965 | 0.69 | 0.63206 |
Target: 5'- cCCGUGGauCGGCUCcugGCCGAgGUCGa -3' miRNA: 3'- cGGCACCgcGCCGAG---CGGUUgUAGUg -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 122955 | 0.69 | 0.63206 |
Target: 5'- cGCCGcggggGGCGCGGa-CGCCGGCGaCGg -3' miRNA: 3'- -CGGCa----CCGCGCCgaGCGGUUGUaGUg -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 4793 | 0.69 | 0.639148 |
Target: 5'- gGCCGcGGCGCGGUagcgggccgcggccUgGCgGACGUCGu -3' miRNA: 3'- -CGGCaCCGCGCCG--------------AgCGgUUGUAGUg -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 19383 | 0.69 | 0.642184 |
Target: 5'- uGUCGUugGGCGUGGCcCGCCGGacgGUCAg -3' miRNA: 3'- -CGGCA--CCGCGCCGaGCGGUUg--UAGUg -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 63996 | 0.69 | 0.642184 |
Target: 5'- uCCGUcugcgugcGGUGCGGCgccaggCGCCcgaucGCGUCGCg -3' miRNA: 3'- cGGCA--------CCGCGCCGa-----GCGGu----UGUAGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 67868 | 0.69 | 0.642184 |
Target: 5'- cGCCGaggUGGCGCGcGCgccaGCCcGCGgggCACa -3' miRNA: 3'- -CGGC---ACCGCGC-CGag--CGGuUGUa--GUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 76340 | 0.69 | 0.642184 |
Target: 5'- gGCCG-GGUGCGGCcCGUCGcgcGCgAUCAUc -3' miRNA: 3'- -CGGCaCCGCGCCGaGCGGU---UG-UAGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 122390 | 0.69 | 0.642184 |
Target: 5'- cGCCGcgGGCGCGcgcuggcggcGCUCGCCGcCGUggaCGCc -3' miRNA: 3'- -CGGCa-CCGCGC----------CGAGCGGUuGUA---GUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 100835 | 0.69 | 0.621935 |
Target: 5'- cGCCGUGcCGCucucGGCgagCGUCAACGUgCGCg -3' miRNA: 3'- -CGGCACcGCG----CCGa--GCGGUUGUA-GUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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