Results 21 - 40 of 237 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29540 | 5' | -58.5 | NC_006151.1 | + | 104378 | 0.73 | 0.378442 |
Target: 5'- aGCCGcucuCGCGGCUgGCCcGCAUCGCc -3' miRNA: 3'- -CGGCacc-GCGCCGAgCGGuUGUAGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 129050 | 0.73 | 0.386636 |
Target: 5'- cUCGcGGUGCGGCUCcgccgagcacGCCGugAUCACg -3' miRNA: 3'- cGGCaCCGCGCCGAG----------CGGUugUAGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 63584 | 0.73 | 0.386636 |
Target: 5'- uGgCGUGGCGCgGGUUCGCgAACAcgggCACc -3' miRNA: 3'- -CgGCACCGCG-CCGAGCGgUUGUa---GUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 139617 | 0.72 | 0.419687 |
Target: 5'- uCCG-GGCGCGGCUgggggccauccggCGCCGGCgcggggGUCGCg -3' miRNA: 3'- cGGCaCCGCGCCGA-------------GCGGUUG------UAGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 107531 | 0.72 | 0.456214 |
Target: 5'- cGCCGuUGGCcccgGCGGCccCGCCGGCGcCGCc -3' miRNA: 3'- -CGGC-ACCG----CGCCGa-GCGGUUGUaGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 65818 | 0.72 | 0.429314 |
Target: 5'- cGCgGUGGauggGCGGCcgCGCCAGCGcggcccggcUCACg -3' miRNA: 3'- -CGgCACCg---CGCCGa-GCGGUUGU---------AGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 96869 | 0.72 | 0.429314 |
Target: 5'- cGCCG-GGCGCGGCgcgCGCgGggGCAUgAUg -3' miRNA: 3'- -CGGCaCCGCGCCGa--GCGgU--UGUAgUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 100899 | 0.72 | 0.438177 |
Target: 5'- cGCCGcGGCGCGcGCgCGCCcGACGaCGCg -3' miRNA: 3'- -CGGCaCCGCGC-CGaGCGG-UUGUaGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 54415 | 0.72 | 0.46538 |
Target: 5'- cGCCGaggcgcUGGCGCGGCgcuUCGgCGACGagGCg -3' miRNA: 3'- -CGGC------ACCGCGCCG---AGCgGUUGUagUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 85173 | 0.72 | 0.429314 |
Target: 5'- cGCCGcgGGCGCcGC-CGCCccgcugGGCAUCGCg -3' miRNA: 3'- -CGGCa-CCGCGcCGaGCGG------UUGUAGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 130285 | 0.72 | 0.46538 |
Target: 5'- gGCCGcgGGCGCGcGC-CgGCCGACggCGCg -3' miRNA: 3'- -CGGCa-CCGCGC-CGaG-CGGUUGuaGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 54876 | 0.72 | 0.424046 |
Target: 5'- cGCUGUGGCGCGacGCgagcugcucuuugacUCGCCGGCGcagCGCg -3' miRNA: 3'- -CGGCACCGCGC--CG---------------AGCGGUUGUa--GUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 70639 | 0.72 | 0.46538 |
Target: 5'- cGCCGUGGcCGCGcGCgaggCGCCcguCcUCACg -3' miRNA: 3'- -CGGCACC-GCGC-CGa---GCGGuu-GuAGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 136826 | 0.72 | 0.46538 |
Target: 5'- cGCCGcgcgGGCucugcgacGCGGC-CGCCGGCcUCGCg -3' miRNA: 3'- -CGGCa---CCG--------CGCCGaGCGGUUGuAGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 118126 | 0.72 | 0.429314 |
Target: 5'- uGCuCGUGGCGCGcagCGCCGACGaCGCc -3' miRNA: 3'- -CG-GCACCGCGCcgaGCGGUUGUaGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 21970 | 0.72 | 0.447145 |
Target: 5'- cGgCGUGGUGCGGC--GCCGGCAgCGCc -3' miRNA: 3'- -CgGCACCGCGCCGagCGGUUGUaGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 117836 | 0.72 | 0.459869 |
Target: 5'- gGCCGgGGCGgGccggacucuaccaccGC-CGCCGACGUCGCg -3' miRNA: 3'- -CGGCaCCGCgC---------------CGaGCGGUUGUAGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 100062 | 0.72 | 0.420557 |
Target: 5'- gGUCGUGcGCGCGGC-CGCCGAgGUg-- -3' miRNA: 3'- -CGGCAC-CGCGCCGaGCGGUUgUAgug -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 18676 | 0.72 | 0.420557 |
Target: 5'- gGCCGUacggguuccacgGGCGCgcgGGCggCGCCGGCGUCGu -3' miRNA: 3'- -CGGCA------------CCGCG---CCGa-GCGGUUGUAGUg -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 72359 | 0.72 | 0.447145 |
Target: 5'- cGCCGcagGGCaGCGcgacCUCGCgCAGCGUCGCg -3' miRNA: 3'- -CGGCa--CCG-CGCc---GAGCG-GUUGUAGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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