Results 61 - 80 of 237 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29540 | 5' | -58.5 | NC_006151.1 | + | 92681 | 0.7 | 0.561596 |
Target: 5'- gGCCGgGGaCGCGcGCUCGCC-GCG-CGCc -3' miRNA: 3'- -CGGCaCC-GCGC-CGAGCGGuUGUaGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 20065 | 0.7 | 0.531987 |
Target: 5'- gGCCagcuucUGGCGaaGCUCgGCCAACGUCAUc -3' miRNA: 3'- -CGGc-----ACCGCgcCGAG-CGGUUGUAGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 57194 | 0.7 | 0.561596 |
Target: 5'- gGUCGUGGCGCGaggcgaaggcccGCUCGaCGAggcCGUCGCa -3' miRNA: 3'- -CGGCACCGCGC------------CGAGCgGUU---GUAGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 105089 | 0.7 | 0.56558 |
Target: 5'- gGCCGUcgaguggcugcaccaGGCGCGGCUCaucaUCGACA-CGCa -3' miRNA: 3'- -CGGCA---------------CCGCGCCGAGc---GGUUGUaGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 84617 | 0.7 | 0.561596 |
Target: 5'- cGCCGccGCGCGGC-CGCC-GCggCGCu -3' miRNA: 3'- -CGGCacCGCGCCGaGCGGuUGuaGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 124075 | 0.7 | 0.531987 |
Target: 5'- gGCCGUGcGCGCGGCcgCGaCCgAGCGggacCGCu -3' miRNA: 3'- -CGGCAC-CGCGCCGa-GC-GG-UUGUa---GUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 128493 | 0.7 | 0.551671 |
Target: 5'- cGUCGccGUGUGGCUCGUCAGCAcgagCACc -3' miRNA: 3'- -CGGCacCGCGCCGAGCGGUUGUa---GUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 3132 | 0.7 | 0.581585 |
Target: 5'- gGCCG-GGCGCGGggCGCCcucGGCGggcucggCGCa -3' miRNA: 3'- -CGGCaCCGCGCCgaGCGG---UUGUa------GUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 125466 | 0.7 | 0.581585 |
Target: 5'- cGCCGUGGCcaCGGCcgCGCuCGGCcagCGCg -3' miRNA: 3'- -CGGCACCGc-GCCGa-GCG-GUUGua-GUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 112288 | 0.7 | 0.581585 |
Target: 5'- cGUCGUGGgGaggaucacuucCaGCUCGCgCGGCAUCACg -3' miRNA: 3'- -CGGCACCgC-----------GcCGAGCG-GUUGUAGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 105697 | 0.7 | 0.581585 |
Target: 5'- gGCCGacgccGGCGCGGCcgcgCGCCucGACggCGCc -3' miRNA: 3'- -CGGCa----CCGCGCCGa---GCGG--UUGuaGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 62115 | 0.7 | 0.568573 |
Target: 5'- gGCCGUGGUcgggcugaugcucgGCGuGCUCcugGCCAACAgcuucCACa -3' miRNA: 3'- -CGGCACCG--------------CGC-CGAG---CGGUUGUa----GUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 81392 | 0.7 | 0.531987 |
Target: 5'- cGCCGcGGCGCccaGGUUgGCCAGgGUgGCg -3' miRNA: 3'- -CGGCaCCGCG---CCGAgCGGUUgUAgUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 10999 | 0.7 | 0.57157 |
Target: 5'- gGCCGggGGCccCGGCUCGCCcGCccgcUCGCu -3' miRNA: 3'- -CGGCa-CCGc-GCCGAGCGGuUGu---AGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 10490 | 0.7 | 0.57157 |
Target: 5'- aGCCGcccGGCGCGcGCcCGCCGccGCAggCGCg -3' miRNA: 3'- -CGGCa--CCGCGC-CGaGCGGU--UGUa-GUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 59131 | 0.7 | 0.57157 |
Target: 5'- uGCCGgugggUGGCGCccgcgGGCggguccagGCCGGCGUCGCg -3' miRNA: 3'- -CGGC-----ACCGCG-----CCGag------CGGUUGUAGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 17471 | 0.7 | 0.581585 |
Target: 5'- uGCCGcGGCGUGucCUCGUCGGCggCGCg -3' miRNA: 3'- -CGGCaCCGCGCc-GAGCGGUUGuaGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 3941 | 0.69 | 0.591636 |
Target: 5'- gGCCG-GGCGCgGGCUCcgcggGCCcgGGCcgCGCg -3' miRNA: 3'- -CGGCaCCGCG-CCGAG-----CGG--UUGuaGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 102680 | 0.69 | 0.600707 |
Target: 5'- cGCCGUGGaCGCGGgggCGCCcggcgcgGGCggCGCg -3' miRNA: 3'- -CGGCACC-GCGCCga-GCGG-------UUGuaGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 82257 | 0.69 | 0.601716 |
Target: 5'- gGCCGaGGaa-GGcCUCGcCCAGCGUCACg -3' miRNA: 3'- -CGGCaCCgcgCC-GAGC-GGUUGUAGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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