miRNA display CGI


Results 81 - 100 of 237 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29540 5' -58.5 NC_006151.1 + 115947 0.69 0.621935
Target:  5'- cGCCG-GGCGC-GCgagCGCgAGCGUCGu -3'
miRNA:   3'- -CGGCaCCGCGcCGa--GCGgUUGUAGUg -5'
29540 5' -58.5 NC_006151.1 + 25333 0.69 0.621935
Target:  5'- cGCCGggacGGC-CGGCgUGCCGcgAUAUCACa -3'
miRNA:   3'- -CGGCa---CCGcGCCGaGCGGU--UGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 100835 0.69 0.621935
Target:  5'- cGCCGUGcCGCucucGGCgagCGUCAACGUgCGCg -3'
miRNA:   3'- -CGGCACcGCG----CCGa--GCGGUUGUA-GUG- -5'
29540 5' -58.5 NC_006151.1 + 100965 0.69 0.63206
Target:  5'- cCCGUGGauCGGCUCcugGCCGAgGUCGa -3'
miRNA:   3'- cGGCACCgcGCCGAG---CGGUUgUAGUg -5'
29540 5' -58.5 NC_006151.1 + 122390 0.69 0.642184
Target:  5'- cGCCGcgGGCGCGcgcuggcggcGCUCGCCGcCGUggaCGCc -3'
miRNA:   3'- -CGGCa-CCGCGC----------CGAGCGGUuGUA---GUG- -5'
29540 5' -58.5 NC_006151.1 + 83231 0.69 0.63206
Target:  5'- gGUCGaaGCGCGGCgcgCGCCcccaguCGUCGCg -3'
miRNA:   3'- -CGGCacCGCGCCGa--GCGGuu----GUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 58687 0.69 0.646232
Target:  5'- cGCCGUGcGCGCcgcgccacagcgccgGGUcCGCCAGCGcccccgugccgcUCGCg -3'
miRNA:   3'- -CGGCAC-CGCG---------------CCGaGCGGUUGU------------AGUG- -5'
29540 5' -58.5 NC_006151.1 + 20780 0.69 0.621935
Target:  5'- cGCCG-GGCgaGCGGCUCGC--GCuugCGCa -3'
miRNA:   3'- -CGGCaCCG--CGCCGAGCGguUGua-GUG- -5'
29540 5' -58.5 NC_006151.1 + 75274 0.69 0.621935
Target:  5'- uCC-UGGCGCaGCgcCGCCAGCGUgGCg -3'
miRNA:   3'- cGGcACCGCGcCGa-GCGGUUGUAgUG- -5'
29540 5' -58.5 NC_006151.1 + 85628 0.69 0.621935
Target:  5'- cGCCGccGCGCGGC--GCCAGCGgggaCGCg -3'
miRNA:   3'- -CGGCacCGCGCCGagCGGUUGUa---GUG- -5'
29540 5' -58.5 NC_006151.1 + 122482 0.69 0.621935
Target:  5'- gGCCGgggacgcgGGCGagaCGGCgCGCCGGCG-CGCg -3'
miRNA:   3'- -CGGCa-------CCGC---GCCGaGCGGUUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 118214 0.69 0.631047
Target:  5'- gGCCGUgguggcgGGCGCccggaccaccgGGCUCGgCGGCGggcUCACg -3'
miRNA:   3'- -CGGCA-------CCGCG-----------CCGAGCgGUUGU---AGUG- -5'
29540 5' -58.5 NC_006151.1 + 60629 0.69 0.63206
Target:  5'- cGCCGUcgucggGGCGgGGCUC-CCGGCccgCGCc -3'
miRNA:   3'- -CGGCA------CCGCgCCGAGcGGUUGua-GUG- -5'
29540 5' -58.5 NC_006151.1 + 125998 0.69 0.611818
Target:  5'- uGCUGcuGCGCGGCaUCGCCAACuUCu- -3'
miRNA:   3'- -CGGCacCGCGCCG-AGCGGUUGuAGug -5'
29540 5' -58.5 NC_006151.1 + 19383 0.69 0.642184
Target:  5'- uGUCGUugGGCGUGGCcCGCCGGacgGUCAg -3'
miRNA:   3'- -CGGCA--CCGCGCCGaGCGGUUg--UAGUg -5'
29540 5' -58.5 NC_006151.1 + 129122 0.69 0.601716
Target:  5'- gGCCGaGGCGCgcugGGCgccaaagagCGCCGGCG-CACa -3'
miRNA:   3'- -CGGCaCCGCG----CCGa--------GCGGUUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 82257 0.69 0.601716
Target:  5'- gGCCGaGGaa-GGcCUCGcCCAGCGUCACg -3'
miRNA:   3'- -CGGCaCCgcgCC-GAGC-GGUUGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 102680 0.69 0.600707
Target:  5'- cGCCGUGGaCGCGGgggCGCCcggcgcgGGCggCGCg -3'
miRNA:   3'- -CGGCACC-GCGCCga-GCGG-------UUGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 135158 0.69 0.591636
Target:  5'- cCCGgcgGGCGCGGCccggacgggCGCCGGCugcCGCc -3'
miRNA:   3'- cGGCa--CCGCGCCGa--------GCGGUUGua-GUG- -5'
29540 5' -58.5 NC_006151.1 + 76340 0.69 0.642184
Target:  5'- gGCCG-GGUGCGGCcCGUCGcgcGCgAUCAUc -3'
miRNA:   3'- -CGGCaCCGCGCCGaGCGGU---UG-UAGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.