Results 101 - 120 of 237 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29540 | 5' | -58.5 | NC_006151.1 | + | 78137 | 0.69 | 0.615864 |
Target: 5'- gGCCGcgGGCGCcucggacgacgccucGGC-CGCCGugGUCGa -3' miRNA: 3'- -CGGCa-CCGCG---------------CCGaGCGGUugUAGUg -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 67961 | 0.69 | 0.615864 |
Target: 5'- cGCCGggGGCcaggaccacgcagucGCGGCggccCGCCGGCGcCGCg -3' miRNA: 3'- -CGGCa-CCG---------------CGCCGa---GCGGUUGUaGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 100965 | 0.69 | 0.63206 |
Target: 5'- cCCGUGGauCGGCUCcugGCCGAgGUCGa -3' miRNA: 3'- cGGCACCgcGCCGAG---CGGUUgUAGUg -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 19383 | 0.69 | 0.642184 |
Target: 5'- uGUCGUugGGCGUGGCcCGCCGGacgGUCAg -3' miRNA: 3'- -CGGCA--CCGCGCCGaGCGGUUg--UAGUg -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 82257 | 0.69 | 0.601716 |
Target: 5'- gGCCGaGGaa-GGcCUCGcCCAGCGUCACg -3' miRNA: 3'- -CGGCaCCgcgCC-GAGC-GGUUGUAGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 135158 | 0.69 | 0.591636 |
Target: 5'- cCCGgcgGGCGCGGCccggacgggCGCCGGCugcCGCc -3' miRNA: 3'- cGGCa--CCGCGCCGa--------GCGGUUGua-GUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 3941 | 0.69 | 0.591636 |
Target: 5'- gGCCG-GGCGCgGGCUCcgcggGCCcgGGCcgCGCg -3' miRNA: 3'- -CGGCaCCGCG-CCGAG-----CGG--UUGuaGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 83231 | 0.69 | 0.63206 |
Target: 5'- gGUCGaaGCGCGGCgcgCGCCcccaguCGUCGCg -3' miRNA: 3'- -CGGCacCGCGCCGa--GCGGuu----GUAGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 58687 | 0.69 | 0.646232 |
Target: 5'- cGCCGUGcGCGCcgcgccacagcgccgGGUcCGCCAGCGcccccgugccgcUCGCg -3' miRNA: 3'- -CGGCAC-CGCG---------------CCGaGCGGUUGU------------AGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 122390 | 0.69 | 0.642184 |
Target: 5'- cGCCGcgGGCGCGcgcuggcggcGCUCGCCGcCGUggaCGCc -3' miRNA: 3'- -CGGCa-CCGCGC----------CGAGCGGUuGUA---GUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 76340 | 0.69 | 0.642184 |
Target: 5'- gGCCG-GGUGCGGCcCGUCGcgcGCgAUCAUc -3' miRNA: 3'- -CGGCaCCGCGCCGaGCGGU---UG-UAGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 63996 | 0.69 | 0.642184 |
Target: 5'- uCCGUcugcgugcGGUGCGGCgccaggCGCCcgaucGCGUCGCg -3' miRNA: 3'- cGGCA--------CCGCGCCGa-----GCGGu----UGUAGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 71094 | 0.68 | 0.652301 |
Target: 5'- cGCCGcgGGCGCGGg-CGCCGug--CGCu -3' miRNA: 3'- -CGGCa-CCGCGCCgaGCGGUuguaGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 136590 | 0.68 | 0.666436 |
Target: 5'- aCCGc-GCGCGGCUCcgcgagcaccuggacGCCGucaACGUCACg -3' miRNA: 3'- cGGCacCGCGCCGAG---------------CGGU---UGUAGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 109248 | 0.68 | 0.672479 |
Target: 5'- cGCCGcGGUcuccgcugGCGGC-C-CCGACGUCGCu -3' miRNA: 3'- -CGGCaCCG--------CGCCGaGcGGUUGUAGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 121783 | 0.68 | 0.672479 |
Target: 5'- cGCgGUGGUGCGcgaGCUgGCCccacGCGUCAa -3' miRNA: 3'- -CGgCACCGCGC---CGAgCGGu---UGUAGUg -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 58751 | 0.68 | 0.672479 |
Target: 5'- cGCCGcGGCcaccGCGGC-CGCCGAgccCGUcCACg -3' miRNA: 3'- -CGGCaCCG----CGCCGaGCGGUU---GUA-GUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 80832 | 0.68 | 0.672479 |
Target: 5'- gGCCGggacacgGGCGCGaGCcgCGUCGACGUgaACg -3' miRNA: 3'- -CGGCa------CCGCGC-CGa-GCGGUUGUAg-UG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 89966 | 0.68 | 0.672479 |
Target: 5'- aCCG-GGCGCGGCUgG-CGACGUaggugCACg -3' miRNA: 3'- cGGCaCCGCGCCGAgCgGUUGUA-----GUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 100656 | 0.68 | 0.672479 |
Target: 5'- cGCCGUcgacGaGCGCGGCgUGCUGGCgcucGUCGCg -3' miRNA: 3'- -CGGCA----C-CGCGCCGaGCGGUUG----UAGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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