miRNA display CGI


Results 41 - 60 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29540 5' -58.5 NC_006151.1 + 98060 0.71 0.474642
Target:  5'- aGCCccgGGCGCucggccuggGGCUcgcaaaagucCGCCAGCGUCACc -3'
miRNA:   3'- -CGGca-CCGCG---------CCGA----------GCGGUUGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 99723 0.71 0.483995
Target:  5'- cGCCGacgaGCGCGGCgcUCGUCGACcUCGCc -3'
miRNA:   3'- -CGGCac--CGCGCCG--AGCGGUUGuAGUG- -5'
29540 5' -58.5 NC_006151.1 + 67095 0.71 0.483995
Target:  5'- uCCGaGGaCGCGGUgcgccacuuUCGCCAgcGCGUCACg -3'
miRNA:   3'- cGGCaCC-GCGCCG---------AGCGGU--UGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 20311 0.71 0.483995
Target:  5'- cGCCGUGGCguugGCGGCg-GCgAGCAggacgCGCg -3'
miRNA:   3'- -CGGCACCG----CGCCGagCGgUUGUa----GUG- -5'
29540 5' -58.5 NC_006151.1 + 92171 0.71 0.483995
Target:  5'- gGCCGUGcGCGCcgacggcgacggGGC-CGCCGACG-CGCc -3'
miRNA:   3'- -CGGCAC-CGCG------------CCGaGCGGUUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 5081 0.71 0.483995
Target:  5'- gGCCGcggGGcCGCGGCgggCGCCGGCGgagACg -3'
miRNA:   3'- -CGGCa--CC-GCGCCGa--GCGGUUGUag-UG- -5'
29540 5' -58.5 NC_006151.1 + 86596 0.71 0.483995
Target:  5'- aGCUGcUGGCGCGcGC-CGCCGA-GUCGCc -3'
miRNA:   3'- -CGGC-ACCGCGC-CGaGCGGUUgUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 39339 0.71 0.483995
Target:  5'- cGCgGcucGGCGCGGCgcggCGCCGGC-UCAUc -3'
miRNA:   3'- -CGgCa--CCGCGCCGa---GCGGUUGuAGUG- -5'
29540 5' -58.5 NC_006151.1 + 103737 0.71 0.489648
Target:  5'- aGCCGcUGGCGCGGCagugcgaggagcgCGCCGcgGCGcugCGCg -3'
miRNA:   3'- -CGGC-ACCGCGCCGa------------GCGGU--UGUa--GUG- -5'
29540 5' -58.5 NC_006151.1 + 75644 0.71 0.492487
Target:  5'- uGCCGUcgucgggGGC-CGGCUCGCCGccgaGCAgguagCGCg -3'
miRNA:   3'- -CGGCA-------CCGcGCCGAGCGGU----UGUa----GUG- -5'
29540 5' -58.5 NC_006151.1 + 21479 0.71 0.493435
Target:  5'- cGCCGgcucgGGCagGCGGCcggggggCGCgGGCGUCACc -3'
miRNA:   3'- -CGGCa----CCG--CGCCGa------GCGgUUGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 49249 0.71 0.493435
Target:  5'- gGCUG-GGCGCGGCUCGUgcgCGcCGUCGu -3'
miRNA:   3'- -CGGCaCCGCGCCGAGCG---GUuGUAGUg -5'
29540 5' -58.5 NC_006151.1 + 71320 0.71 0.512562
Target:  5'- aCCGgcaaGCGCGGCggcugCGCCGACGaccUCGCc -3'
miRNA:   3'- cGGCac--CGCGCCGa----GCGGUUGU---AGUG- -5'
29540 5' -58.5 NC_006151.1 + 73782 0.71 0.512562
Target:  5'- uGCUG-GGCgGCGGCgcgcaccucggCGCCcACGUCGCg -3'
miRNA:   3'- -CGGCaCCG-CGCCGa----------GCGGuUGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 36519 0.71 0.512562
Target:  5'- gGCCGgcGGCGCGGCcUCGgaccCCGGCGcCACc -3'
miRNA:   3'- -CGGCa-CCGCGCCG-AGC----GGUUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 75820 0.71 0.522239
Target:  5'- aGCCGcUGGCGCacGC-CgGCCGugGUCACa -3'
miRNA:   3'- -CGGC-ACCGCGc-CGaG-CGGUugUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 97567 0.71 0.522239
Target:  5'- cGCCGaGGCGCaGCUCGCgGuccACGUC-Ca -3'
miRNA:   3'- -CGGCaCCGCGcCGAGCGgU---UGUAGuG- -5'
29540 5' -58.5 NC_006151.1 + 81392 0.7 0.531987
Target:  5'- cGCCGcGGCGCccaGGUUgGCCAGgGUgGCg -3'
miRNA:   3'- -CGGCaCCGCG---CCGAgCGGUUgUAgUG- -5'
29540 5' -58.5 NC_006151.1 + 124075 0.7 0.531987
Target:  5'- gGCCGUGcGCGCGGCcgCGaCCgAGCGggacCGCu -3'
miRNA:   3'- -CGGCAC-CGCGCCGa-GC-GG-UUGUa---GUG- -5'
29540 5' -58.5 NC_006151.1 + 20065 0.7 0.531987
Target:  5'- gGCCagcuucUGGCGaaGCUCgGCCAACGUCAUc -3'
miRNA:   3'- -CGGc-----ACCGCgcCGAG-CGGUUGUAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.