miRNA display CGI


Results 61 - 80 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29540 5' -58.5 NC_006151.1 + 124075 0.7 0.531987
Target:  5'- gGCCGUGcGCGCGGCcgCGaCCgAGCGggacCGCu -3'
miRNA:   3'- -CGGCAC-CGCGCCGa-GC-GG-UUGUa---GUG- -5'
29540 5' -58.5 NC_006151.1 + 53965 0.7 0.531987
Target:  5'- cGCCaGcGGCgGCGGCgccucCGCgGGCGUCGCg -3'
miRNA:   3'- -CGG-CaCCG-CGCCGa----GCGgUUGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 45415 0.7 0.541799
Target:  5'- uGCCGguguguugugGGCcgGgGGUUCGCgGGCGUCGCa -3'
miRNA:   3'- -CGGCa---------CCG--CgCCGAGCGgUUGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 128493 0.7 0.551671
Target:  5'- cGUCGccGUGUGGCUCGUCAGCAcgagCACc -3'
miRNA:   3'- -CGGCacCGCGCCGAGCGGUUGUa---GUG- -5'
29540 5' -58.5 NC_006151.1 + 92681 0.7 0.561596
Target:  5'- gGCCGgGGaCGCGcGCUCGCC-GCG-CGCc -3'
miRNA:   3'- -CGGCaCC-GCGC-CGAGCGGuUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 57194 0.7 0.561596
Target:  5'- gGUCGUGGCGCGaggcgaaggcccGCUCGaCGAggcCGUCGCa -3'
miRNA:   3'- -CGGCACCGCGC------------CGAGCgGUU---GUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 84617 0.7 0.561596
Target:  5'- cGCCGccGCGCGGC-CGCC-GCggCGCu -3'
miRNA:   3'- -CGGCacCGCGCCGaGCGGuUGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 105089 0.7 0.56558
Target:  5'- gGCCGUcgaguggcugcaccaGGCGCGGCUCaucaUCGACA-CGCa -3'
miRNA:   3'- -CGGCA---------------CCGCGCCGAGc---GGUUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 62115 0.7 0.568573
Target:  5'- gGCCGUGGUcgggcugaugcucgGCGuGCUCcugGCCAACAgcuucCACa -3'
miRNA:   3'- -CGGCACCG--------------CGC-CGAG---CGGUUGUa----GUG- -5'
29540 5' -58.5 NC_006151.1 + 59131 0.7 0.57157
Target:  5'- uGCCGgugggUGGCGCccgcgGGCggguccagGCCGGCGUCGCg -3'
miRNA:   3'- -CGGC-----ACCGCG-----CCGag------CGGUUGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 10999 0.7 0.57157
Target:  5'- gGCCGggGGCccCGGCUCGCCcGCccgcUCGCu -3'
miRNA:   3'- -CGGCa-CCGc-GCCGAGCGGuUGu---AGUG- -5'
29540 5' -58.5 NC_006151.1 + 10490 0.7 0.57157
Target:  5'- aGCCGcccGGCGCGcGCcCGCCGccGCAggCGCg -3'
miRNA:   3'- -CGGCa--CCGCGC-CGaGCGGU--UGUa-GUG- -5'
29540 5' -58.5 NC_006151.1 + 112288 0.7 0.581585
Target:  5'- cGUCGUGGgGaggaucacuucCaGCUCGCgCGGCAUCACg -3'
miRNA:   3'- -CGGCACCgC-----------GcCGAGCG-GUUGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 105697 0.7 0.581585
Target:  5'- gGCCGacgccGGCGCGGCcgcgCGCCucGACggCGCc -3'
miRNA:   3'- -CGGCa----CCGCGCCGa---GCGG--UUGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 17471 0.7 0.581585
Target:  5'- uGCCGcGGCGUGucCUCGUCGGCggCGCg -3'
miRNA:   3'- -CGGCaCCGCGCc-GAGCGGUUGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 125466 0.7 0.581585
Target:  5'- cGCCGUGGCcaCGGCcgCGCuCGGCcagCGCg -3'
miRNA:   3'- -CGGCACCGc-GCCGa-GCG-GUUGua-GUG- -5'
29540 5' -58.5 NC_006151.1 + 3132 0.7 0.581585
Target:  5'- gGCCG-GGCGCGGggCGCCcucGGCGggcucggCGCa -3'
miRNA:   3'- -CGGCaCCGCGCCgaGCGG---UUGUa------GUG- -5'
29540 5' -58.5 NC_006151.1 + 3425 0.69 0.591636
Target:  5'- cGCCGgccgGGaCGCGGCggaaGCCGcCGUCGg -3'
miRNA:   3'- -CGGCa---CC-GCGCCGag--CGGUuGUAGUg -5'
29540 5' -58.5 NC_006151.1 + 3941 0.69 0.591636
Target:  5'- gGCCG-GGCGCgGGCUCcgcggGCCcgGGCcgCGCg -3'
miRNA:   3'- -CGGCaCCGCG-CCGAG-----CGG--UUGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 135158 0.69 0.591636
Target:  5'- cCCGgcgGGCGCGGCccggacgggCGCCGGCugcCGCc -3'
miRNA:   3'- cGGCa--CCGCGCCGa--------GCGGUUGua-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.