miRNA display CGI


Results 81 - 100 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29540 5' -58.5 NC_006151.1 + 102680 0.69 0.600707
Target:  5'- cGCCGUGGaCGCGGgggCGCCcggcgcgGGCggCGCg -3'
miRNA:   3'- -CGGCACC-GCGCCga-GCGG-------UUGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 129122 0.69 0.601716
Target:  5'- gGCCGaGGCGCgcugGGCgccaaagagCGCCGGCG-CACa -3'
miRNA:   3'- -CGGCaCCGCG----CCGa--------GCGGUUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 82257 0.69 0.601716
Target:  5'- gGCCGaGGaa-GGcCUCGcCCAGCGUCACg -3'
miRNA:   3'- -CGGCaCCgcgCC-GAGC-GGUUGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 125998 0.69 0.611818
Target:  5'- uGCUGcuGCGCGGCaUCGCCAACuUCu- -3'
miRNA:   3'- -CGGCacCGCGCCG-AGCGGUUGuAGug -5'
29540 5' -58.5 NC_006151.1 + 73929 0.69 0.611818
Target:  5'- gGCCGUGGUGCaGCgaGCCGucguGCGUgCGCa -3'
miRNA:   3'- -CGGCACCGCGcCGagCGGU----UGUA-GUG- -5'
29540 5' -58.5 NC_006151.1 + 106240 0.69 0.611818
Target:  5'- cGCgGUGGC-CGGCgaGCCGACG-CACc -3'
miRNA:   3'- -CGgCACCGcGCCGagCGGUUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 130131 0.69 0.611818
Target:  5'- gGCCGUgGGCGCG---CGCCAGCAggUACa -3'
miRNA:   3'- -CGGCA-CCGCGCcgaGCGGUUGUa-GUG- -5'
29540 5' -58.5 NC_006151.1 + 67961 0.69 0.615864
Target:  5'- cGCCGggGGCcaggaccacgcagucGCGGCggccCGCCGGCGcCGCg -3'
miRNA:   3'- -CGGCa-CCG---------------CGCCGa---GCGGUUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 78137 0.69 0.615864
Target:  5'- gGCCGcgGGCGCcucggacgacgccucGGC-CGCCGugGUCGa -3'
miRNA:   3'- -CGGCa-CCGCG---------------CCGaGCGGUugUAGUg -5'
29540 5' -58.5 NC_006151.1 + 100835 0.69 0.621935
Target:  5'- cGCCGUGcCGCucucGGCgagCGUCAACGUgCGCg -3'
miRNA:   3'- -CGGCACcGCG----CCGa--GCGGUUGUA-GUG- -5'
29540 5' -58.5 NC_006151.1 + 99552 0.69 0.621935
Target:  5'- aGCaCGUgGGCGCGGCgCGCgCGGCGcugcugCGCg -3'
miRNA:   3'- -CG-GCA-CCGCGCCGaGCG-GUUGUa-----GUG- -5'
29540 5' -58.5 NC_006151.1 + 122482 0.69 0.621935
Target:  5'- gGCCGgggacgcgGGCGagaCGGCgCGCCGGCG-CGCg -3'
miRNA:   3'- -CGGCa-------CCGC---GCCGaGCGGUUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 75274 0.69 0.621935
Target:  5'- uCC-UGGCGCaGCgcCGCCAGCGUgGCg -3'
miRNA:   3'- cGGcACCGCGcCGa-GCGGUUGUAgUG- -5'
29540 5' -58.5 NC_006151.1 + 25333 0.69 0.621935
Target:  5'- cGCCGggacGGC-CGGCgUGCCGcgAUAUCACa -3'
miRNA:   3'- -CGGCa---CCGcGCCGaGCGGU--UGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 20780 0.69 0.621935
Target:  5'- cGCCG-GGCgaGCGGCUCGC--GCuugCGCa -3'
miRNA:   3'- -CGGCaCCG--CGCCGAGCGguUGua-GUG- -5'
29540 5' -58.5 NC_006151.1 + 86552 0.69 0.621935
Target:  5'- cGCCGUGGCGCcGUUcCGgCAGCucucggCGCg -3'
miRNA:   3'- -CGGCACCGCGcCGA-GCgGUUGua----GUG- -5'
29540 5' -58.5 NC_006151.1 + 64385 0.69 0.621935
Target:  5'- gGCCGUGGCcagcccGCGGCgcagcagCGUCcACAggUCGCu -3'
miRNA:   3'- -CGGCACCG------CGCCGa------GCGGuUGU--AGUG- -5'
29540 5' -58.5 NC_006151.1 + 115947 0.69 0.621935
Target:  5'- cGCCG-GGCGC-GCgagCGCgAGCGUCGu -3'
miRNA:   3'- -CGGCaCCGCGcCGa--GCGgUUGUAGUg -5'
29540 5' -58.5 NC_006151.1 + 85628 0.69 0.621935
Target:  5'- cGCCGccGCGCGGC--GCCAGCGgggaCGCg -3'
miRNA:   3'- -CGGCacCGCGCCGagCGGUUGUa---GUG- -5'
29540 5' -58.5 NC_006151.1 + 118214 0.69 0.631047
Target:  5'- gGCCGUgguggcgGGCGCccggaccaccgGGCUCGgCGGCGggcUCACg -3'
miRNA:   3'- -CGGCA-------CCGCG-----------CCGAGCgGUUGU---AGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.