miRNA display CGI


Results 101 - 120 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29540 5' -58.5 NC_006151.1 + 122955 0.69 0.63206
Target:  5'- cGCCGcggggGGCGCGGa-CGCCGGCGaCGg -3'
miRNA:   3'- -CGGCa----CCGCGCCgaGCGGUUGUaGUg -5'
29540 5' -58.5 NC_006151.1 + 100965 0.69 0.63206
Target:  5'- cCCGUGGauCGGCUCcugGCCGAgGUCGa -3'
miRNA:   3'- cGGCACCgcGCCGAG---CGGUUgUAGUg -5'
29540 5' -58.5 NC_006151.1 + 83231 0.69 0.63206
Target:  5'- gGUCGaaGCGCGGCgcgCGCCcccaguCGUCGCg -3'
miRNA:   3'- -CGGCacCGCGCCGa--GCGGuu----GUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 54719 0.69 0.63206
Target:  5'- gGCCuggacgagGUGGC-CGaGCUCGCCGaggccaugcgcgGCGUCACc -3'
miRNA:   3'- -CGG--------CACCGcGC-CGAGCGGU------------UGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 60629 0.69 0.63206
Target:  5'- cGCCGUcgucggGGCGgGGCUC-CCGGCccgCGCc -3'
miRNA:   3'- -CGGCA------CCGCgCCGAGcGGUUGua-GUG- -5'
29540 5' -58.5 NC_006151.1 + 4793 0.69 0.639148
Target:  5'- gGCCGcGGCGCGGUagcgggccgcggccUgGCgGACGUCGu -3'
miRNA:   3'- -CGGCaCCGCGCCG--------------AgCGgUUGUAGUg -5'
29540 5' -58.5 NC_006151.1 + 76340 0.69 0.642184
Target:  5'- gGCCG-GGUGCGGCcCGUCGcgcGCgAUCAUc -3'
miRNA:   3'- -CGGCaCCGCGCCGaGCGGU---UG-UAGUG- -5'
29540 5' -58.5 NC_006151.1 + 19383 0.69 0.642184
Target:  5'- uGUCGUugGGCGUGGCcCGCCGGacgGUCAg -3'
miRNA:   3'- -CGGCA--CCGCGCCGaGCGGUUg--UAGUg -5'
29540 5' -58.5 NC_006151.1 + 63996 0.69 0.642184
Target:  5'- uCCGUcugcgugcGGUGCGGCgccaggCGCCcgaucGCGUCGCg -3'
miRNA:   3'- cGGCA--------CCGCGCCGa-----GCGGu----UGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 122390 0.69 0.642184
Target:  5'- cGCCGcgGGCGCGcgcuggcggcGCUCGCCGcCGUggaCGCc -3'
miRNA:   3'- -CGGCa-CCGCGC----------CGAGCGGUuGUA---GUG- -5'
29540 5' -58.5 NC_006151.1 + 67868 0.69 0.642184
Target:  5'- cGCCGaggUGGCGCGcGCgccaGCCcGCGgggCACa -3'
miRNA:   3'- -CGGC---ACCGCGC-CGag--CGGuUGUa--GUG- -5'
29540 5' -58.5 NC_006151.1 + 58687 0.69 0.646232
Target:  5'- cGCCGUGcGCGCcgcgccacagcgccgGGUcCGCCAGCGcccccgugccgcUCGCg -3'
miRNA:   3'- -CGGCAC-CGCG---------------CCGaGCGGUUGU------------AGUG- -5'
29540 5' -58.5 NC_006151.1 + 89279 0.68 0.650279
Target:  5'- cGCCGcGGCGaUGGCcgccgcguagagCGCCAgcagagcgaGCAUCGCa -3'
miRNA:   3'- -CGGCaCCGC-GCCGa-----------GCGGU---------UGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 71094 0.68 0.652301
Target:  5'- cGCCGcgGGCGCGGg-CGCCGug--CGCu -3'
miRNA:   3'- -CGGCa-CCGCGCCgaGCGGUuguaGUG- -5'
29540 5' -58.5 NC_006151.1 + 57605 0.68 0.652301
Target:  5'- gGCCGgccucGGcCGCGGC-CGCCucGACggCGCg -3'
miRNA:   3'- -CGGCa----CC-GCGCCGaGCGG--UUGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 28107 0.68 0.652301
Target:  5'- aGCgG-GGCGCGGCuccUCGUCGGCucggggCGCg -3'
miRNA:   3'- -CGgCaCCGCGCCG---AGCGGUUGua----GUG- -5'
29540 5' -58.5 NC_006151.1 + 106521 0.68 0.652301
Target:  5'- uGCCG-GGCGC-GCUgGCCAcCuUCACc -3'
miRNA:   3'- -CGGCaCCGCGcCGAgCGGUuGuAGUG- -5'
29540 5' -58.5 NC_006151.1 + 122677 0.68 0.652301
Target:  5'- cGCCGaggUGcGCGCGGCg-GCCGugGagcUCGCg -3'
miRNA:   3'- -CGGC---AC-CGCGCCGagCGGUugU---AGUG- -5'
29540 5' -58.5 NC_006151.1 + 136590 0.68 0.666436
Target:  5'- aCCGc-GCGCGGCUCcgcgagcaccuggacGCCGucaACGUCACg -3'
miRNA:   3'- cGGCacCGCGCCGAG---------------CGGU---UGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 121783 0.68 0.672479
Target:  5'- cGCgGUGGUGCGcgaGCUgGCCccacGCGUCAa -3'
miRNA:   3'- -CGgCACCGCGC---CGAgCGGu---UGUAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.