Results 121 - 140 of 237 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29540 | 5' | -58.5 | NC_006151.1 | + | 100656 | 0.68 | 0.672479 |
Target: 5'- cGCCGUcgacGaGCGCGGCgUGCUGGCgcucGUCGCg -3' miRNA: 3'- -CGGCA----C-CGCGCCGaGCGGUUG----UAGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 109248 | 0.68 | 0.672479 |
Target: 5'- cGCCGcGGUcuccgcugGCGGC-C-CCGACGUCGCu -3' miRNA: 3'- -CGGCaCCG--------CGCCGaGcGGUUGUAGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 89966 | 0.68 | 0.672479 |
Target: 5'- aCCG-GGCGCGGCUgG-CGACGUaggugCACg -3' miRNA: 3'- cGGCaCCGCGCCGAgCgGUUGUA-----GUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 121783 | 0.68 | 0.672479 |
Target: 5'- cGCgGUGGUGCGcgaGCUgGCCccacGCGUCAa -3' miRNA: 3'- -CGgCACCGCGC---CGAgCGGu---UGUAGUg -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 58751 | 0.68 | 0.672479 |
Target: 5'- cGCCGcGGCcaccGCGGC-CGCCGAgccCGUcCACg -3' miRNA: 3'- -CGGCaCCG----CGCCGaGCGGUU---GUA-GUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 80832 | 0.68 | 0.672479 |
Target: 5'- gGCCGggacacgGGCGCGaGCcgCGUCGACGUgaACg -3' miRNA: 3'- -CGGCa------CCGCGC-CGa-GCGGUUGUAg-UG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 102506 | 0.68 | 0.682524 |
Target: 5'- cGCCGcGGCGCGGgacccCGgCGGCGUCuACg -3' miRNA: 3'- -CGGCaCCGCGCCga---GCgGUUGUAG-UG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 138137 | 0.68 | 0.682524 |
Target: 5'- gGCCGUGGaCGCGGaggaCCGGCG-CGCg -3' miRNA: 3'- -CGGCACC-GCGCCgagcGGUUGUaGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 130828 | 0.68 | 0.682524 |
Target: 5'- cGCuCGaGGCGCGGCgcggagucgUCGCCGucgGCggCGCg -3' miRNA: 3'- -CG-GCaCCGCGCCG---------AGCGGU---UGuaGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 58004 | 0.68 | 0.682524 |
Target: 5'- cGCCuccGGCGCGGCcgCGgCCAccuugauCGUCGCa -3' miRNA: 3'- -CGGca-CCGCGCCGa-GC-GGUu------GUAGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 48850 | 0.68 | 0.686531 |
Target: 5'- cUCGUGGCGCGcGCugcuggagcccgagaUCGCCAaGCcgUACg -3' miRNA: 3'- cGGCACCGCGC-CG---------------AGCGGU-UGuaGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 103937 | 0.68 | 0.69153 |
Target: 5'- aGCCGcagcugcagaagaUGGCgcucGCGGCgCGCCAgcGCGUCGg -3' miRNA: 3'- -CGGC-------------ACCG----CGCCGaGCGGU--UGUAGUg -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 131781 | 0.68 | 0.692529 |
Target: 5'- gGCCGcgGGCGCcGCcgUCGUCAGCG-CGCc -3' miRNA: 3'- -CGGCa-CCGCGcCG--AGCGGUUGUaGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 90981 | 0.68 | 0.692529 |
Target: 5'- cGCCcUGGCGCcGCUgGCUGGCG-CGCu -3' miRNA: 3'- -CGGcACCGCGcCGAgCGGUUGUaGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 103821 | 0.68 | 0.692529 |
Target: 5'- gGCCGUGGCgGCGGC-CGUgGAgAUg-- -3' miRNA: 3'- -CGGCACCG-CGCCGaGCGgUUgUAgug -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 73040 | 0.68 | 0.692529 |
Target: 5'- gGCgGUGGCGCGGUgggggUGCgCGGgGUcCGCg -3' miRNA: 3'- -CGgCACCGCGCCGa----GCG-GUUgUA-GUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 31611 | 0.68 | 0.692529 |
Target: 5'- cGCCGccugGGCGgGGaugccgCGCCGGCAcgagCGCa -3' miRNA: 3'- -CGGCa---CCGCgCCga----GCGGUUGUa---GUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 63749 | 0.68 | 0.692529 |
Target: 5'- gGCgCGUcGGCGgGGCguccucggCGCCcccGCGUCGCc -3' miRNA: 3'- -CG-GCA-CCGCgCCGa-------GCGGu--UGUAGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 39167 | 0.68 | 0.692529 |
Target: 5'- gGCCucucGGCGCuGCUCGCCGcCuUCGCc -3' miRNA: 3'- -CGGca--CCGCGcCGAGCGGUuGuAGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 133466 | 0.68 | 0.701491 |
Target: 5'- gGUCGaGGCccgcgagGCGGC-CGCgGGCGUCACc -3' miRNA: 3'- -CGGCaCCG-------CGCCGaGCGgUUGUAGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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