miRNA display CGI


Results 141 - 160 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29540 5' -58.5 NC_006151.1 + 114911 0.68 0.702484
Target:  5'- cCCG-GGCGCacGGC-C-CCGGCGUCGCg -3'
miRNA:   3'- cGGCaCCGCG--CCGaGcGGUUGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 75427 0.68 0.702484
Target:  5'- cCCGgcgugGGCGCGaaGCU-GCCGGCGUgGCg -3'
miRNA:   3'- cGGCa----CCGCGC--CGAgCGGUUGUAgUG- -5'
29540 5' -58.5 NC_006151.1 + 131868 0.68 0.702484
Target:  5'- cGCCGgcGGCGuCGGgUCGCagGGCAgCACg -3'
miRNA:   3'- -CGGCa-CCGC-GCCgAGCGg-UUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 129005 0.68 0.702484
Target:  5'- cGCCGUGaugcccuucaGCGCGGC--GUCGGCcgCGCg -3'
miRNA:   3'- -CGGCAC----------CGCGCCGagCGGUUGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 36661 0.68 0.702484
Target:  5'- cGCCGgagGGgacCGCGG-UCGUCAcCAUCACc -3'
miRNA:   3'- -CGGCa--CC---GCGCCgAGCGGUuGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 130890 0.68 0.702484
Target:  5'- gGCgGUGGagGCGGCggccgUCGCCGuCGUCGg -3'
miRNA:   3'- -CGgCACCg-CGCCG-----AGCGGUuGUAGUg -5'
29540 5' -58.5 NC_006151.1 + 4220 0.68 0.702484
Target:  5'- gGCCGgGGCGCgGGCgggCGCgGGCAgccggaGCg -3'
miRNA:   3'- -CGGCaCCGCG-CCGa--GCGgUUGUag----UG- -5'
29540 5' -58.5 NC_006151.1 + 78665 0.68 0.70645
Target:  5'- gGCCGgGGCGCGGgUgcuggacgggcucuaCGCCGGCcggggccucGUCGCc -3'
miRNA:   3'- -CGGCaCCGCGCCgA---------------GCGGUUG---------UAGUG- -5'
29540 5' -58.5 NC_006151.1 + 75761 0.67 0.711394
Target:  5'- cGCCGUaGGUcacgggcacguccGCGuGCgugucCGCCAGCGUCAg -3'
miRNA:   3'- -CGGCA-CCG-------------CGC-CGa----GCGGUUGUAGUg -5'
29540 5' -58.5 NC_006151.1 + 58567 0.67 0.712381
Target:  5'- cGCCGc--CGCcGCcCGCCGGCGUCGCg -3'
miRNA:   3'- -CGGCaccGCGcCGaGCGGUUGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 72266 0.67 0.712381
Target:  5'- cGCCGagcGGCGUGGCcagcaUGCggugCGGCGUCACg -3'
miRNA:   3'- -CGGCa--CCGCGCCGa----GCG----GUUGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 104977 0.67 0.712381
Target:  5'- cGCCGccGC-CGGcCUCGCuCAACAUCGa -3'
miRNA:   3'- -CGGCacCGcGCC-GAGCG-GUUGUAGUg -5'
29540 5' -58.5 NC_006151.1 + 132636 0.67 0.712381
Target:  5'- cGCCGUcGGCGCccggaccugGGC-CGCCAccuCGUcCGCg -3'
miRNA:   3'- -CGGCA-CCGCG---------CCGaGCGGUu--GUA-GUG- -5'
29540 5' -58.5 NC_006151.1 + 44069 0.67 0.712381
Target:  5'- aCgGUGGUGCGGUUUGgUAGCAgacgaUCACc -3'
miRNA:   3'- cGgCACCGCGCCGAGCgGUUGU-----AGUG- -5'
29540 5' -58.5 NC_006151.1 + 132336 0.67 0.719269
Target:  5'- cGCCGUGGCcacguacagguGCaggaagagccagggGGCcaggCGCgCGACGUCGCg -3'
miRNA:   3'- -CGGCACCG-----------CG--------------CCGa---GCG-GUUGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 102886 0.67 0.722211
Target:  5'- cGCgGUGGCG-GGCcugCGCCGccuCGUCGa -3'
miRNA:   3'- -CGgCACCGCgCCGa--GCGGUu--GUAGUg -5'
29540 5' -58.5 NC_006151.1 + 26868 0.67 0.722211
Target:  5'- aGCC--GGCGuCGucCUCGUCGACGUCGCa -3'
miRNA:   3'- -CGGcaCCGC-GCc-GAGCGGUUGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 64631 0.67 0.722211
Target:  5'- gGCCGcggGGCGCGGCgccccgCGCaggAACcgCAg -3'
miRNA:   3'- -CGGCa--CCGCGCCGa-----GCGg--UUGuaGUg -5'
29540 5' -58.5 NC_006151.1 + 95845 0.67 0.722211
Target:  5'- cCCGUGGgGC-GCUCGCU---GUCGCu -3'
miRNA:   3'- cGGCACCgCGcCGAGCGGuugUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 100359 0.67 0.722211
Target:  5'- cGUCGUGGaCGCcgugGGCgccuuccgCGCCGAgGUCAa -3'
miRNA:   3'- -CGGCACC-GCG----CCGa-------GCGGUUgUAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.