miRNA display CGI


Results 61 - 80 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29540 5' -58.5 NC_006151.1 + 69463 0.67 0.751211
Target:  5'- cGCCGcgGGCGcCGGCaccgUCGCCGccGCcUCGa -3'
miRNA:   3'- -CGGCa-CCGC-GCCG----AGCGGU--UGuAGUg -5'
29540 5' -58.5 NC_006151.1 + 130245 0.67 0.751211
Target:  5'- aGCCGcagaaGGCGCGGaagagGCCGGCG-CGCg -3'
miRNA:   3'- -CGGCa----CCGCGCCgag--CGGUUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 117202 0.67 0.751211
Target:  5'- cGUCGUaguaguagacgGGCGCGGCgUCGaCGACG-CGCg -3'
miRNA:   3'- -CGGCA-----------CCGCGCCG-AGCgGUUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 104067 0.67 0.751211
Target:  5'- gGCCGacgcGGCGCuGCgccgCGCCgAGCAgCACg -3'
miRNA:   3'- -CGGCa---CCGCGcCGa---GCGG-UUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 99346 0.67 0.751211
Target:  5'- cGCCGUcGGCugcacgGCGGUcgUCGgCGGCGUCGu -3'
miRNA:   3'- -CGGCA-CCG------CGCCG--AGCgGUUGUAGUg -5'
29540 5' -58.5 NC_006151.1 + 58373 0.67 0.750258
Target:  5'- cGUCGUGaucucgacggagaGCGCGGCgcaGCCGGcCAUgGCg -3'
miRNA:   3'- -CGGCAC-------------CGCGCCGag-CGGUU-GUAgUG- -5'
29540 5' -58.5 NC_006151.1 + 33268 0.67 0.748349
Target:  5'- gGCgGUGGCgGCGGCcaUCGCCcgacccuuccccggGGCG-CGCg -3'
miRNA:   3'- -CGgCACCG-CGCCG--AGCGG--------------UUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 131118 0.67 0.741635
Target:  5'- gGCCGcGGCGCGGgaggccgcggCGCCGcggcCGUCAUa -3'
miRNA:   3'- -CGGCaCCGCGCCga--------GCGGUu---GUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 97370 0.67 0.741635
Target:  5'- gGCgGcgGGCGCGGCgggggCGUCGGCcUCGu -3'
miRNA:   3'- -CGgCa-CCGCGCCGa----GCGGUUGuAGUg -5'
29540 5' -58.5 NC_006151.1 + 98814 0.67 0.741635
Target:  5'- uGCCGcUGGCGuUGGCggugCGCCAgauGCAgaACg -3'
miRNA:   3'- -CGGC-ACCGC-GCCGa---GCGGU---UGUagUG- -5'
29540 5' -58.5 NC_006151.1 + 88875 0.67 0.735844
Target:  5'- uCCG-GGCGCgggGGCUCGUCAaaguacucggggucgGCGUCGg -3'
miRNA:   3'- cGGCaCCGCG---CCGAGCGGU---------------UGUAGUg -5'
29540 5' -58.5 NC_006151.1 + 63175 0.67 0.731966
Target:  5'- gGCCuuggGGCGCacggggccgGGCUCGCCGAC--CAUg -3'
miRNA:   3'- -CGGca--CCGCG---------CCGAGCGGUUGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 120524 0.67 0.731966
Target:  5'- aGCUGccGGCGCGGCU-GCUgaccaaggacGACAUCGa -3'
miRNA:   3'- -CGGCa-CCGCGCCGAgCGG----------UUGUAGUg -5'
29540 5' -58.5 NC_006151.1 + 13187 0.67 0.731966
Target:  5'- gGCCGUcucggGGCccGCGGCgcCGCCAAC-UCGa -3'
miRNA:   3'- -CGGCA-----CCG--CGCCGa-GCGGUUGuAGUg -5'
29540 5' -58.5 NC_006151.1 + 6291 0.67 0.731966
Target:  5'- gGCCGcGGCgGCGGC-CGCCAGgAgcUgGCu -3'
miRNA:   3'- -CGGCaCCG-CGCCGaGCGGUUgU--AgUG- -5'
29540 5' -58.5 NC_006151.1 + 26868 0.67 0.722211
Target:  5'- aGCC--GGCGuCGucCUCGUCGACGUCGCa -3'
miRNA:   3'- -CGGcaCCGC-GCc-GAGCGGUUGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 64631 0.67 0.722211
Target:  5'- gGCCGcggGGCGCGGCgccccgCGCaggAACcgCAg -3'
miRNA:   3'- -CGGCa--CCGCGCCGa-----GCGg--UUGuaGUg -5'
29540 5' -58.5 NC_006151.1 + 95845 0.67 0.722211
Target:  5'- cCCGUGGgGC-GCUCGCU---GUCGCu -3'
miRNA:   3'- cGGCACCgCGcCGAGCGGuugUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 100359 0.67 0.722211
Target:  5'- cGUCGUGGaCGCcgugGGCgccuuccgCGCCGAgGUCAa -3'
miRNA:   3'- -CGGCACC-GCG----CCGa-------GCGGUUgUAGUg -5'
29540 5' -58.5 NC_006151.1 + 118441 0.67 0.722211
Target:  5'- aGgUGUGcGCGCGGCUCgGCCuggccGCGgacgCGCa -3'
miRNA:   3'- -CgGCAC-CGCGCCGAG-CGGu----UGUa---GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.