miRNA display CGI


Results 101 - 120 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29540 5' -58.5 NC_006151.1 + 73040 0.68 0.692529
Target:  5'- gGCgGUGGCGCGGUgggggUGCgCGGgGUcCGCg -3'
miRNA:   3'- -CGgCACCGCGCCGa----GCG-GUUgUA-GUG- -5'
29540 5' -58.5 NC_006151.1 + 39167 0.68 0.692529
Target:  5'- gGCCucucGGCGCuGCUCGCCGcCuUCGCc -3'
miRNA:   3'- -CGGca--CCGCGcCGAGCGGUuGuAGUG- -5'
29540 5' -58.5 NC_006151.1 + 103821 0.68 0.692529
Target:  5'- gGCCGUGGCgGCGGC-CGUgGAgAUg-- -3'
miRNA:   3'- -CGGCACCG-CGCCGaGCGgUUgUAgug -5'
29540 5' -58.5 NC_006151.1 + 90981 0.68 0.692529
Target:  5'- cGCCcUGGCGCcGCUgGCUGGCG-CGCu -3'
miRNA:   3'- -CGGcACCGCGcCGAgCGGUUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 131781 0.68 0.692529
Target:  5'- gGCCGcgGGCGCcGCcgUCGUCAGCG-CGCc -3'
miRNA:   3'- -CGGCa-CCGCGcCG--AGCGGUUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 103937 0.68 0.69153
Target:  5'- aGCCGcagcugcagaagaUGGCgcucGCGGCgCGCCAgcGCGUCGg -3'
miRNA:   3'- -CGGC-------------ACCG----CGCCGaGCGGU--UGUAGUg -5'
29540 5' -58.5 NC_006151.1 + 48850 0.68 0.686531
Target:  5'- cUCGUGGCGCGcGCugcuggagcccgagaUCGCCAaGCcgUACg -3'
miRNA:   3'- cGGCACCGCGC-CG---------------AGCGGU-UGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 58004 0.68 0.682524
Target:  5'- cGCCuccGGCGCGGCcgCGgCCAccuugauCGUCGCa -3'
miRNA:   3'- -CGGca-CCGCGCCGa-GC-GGUu------GUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 102506 0.68 0.682524
Target:  5'- cGCCGcGGCGCGGgacccCGgCGGCGUCuACg -3'
miRNA:   3'- -CGGCaCCGCGCCga---GCgGUUGUAG-UG- -5'
29540 5' -58.5 NC_006151.1 + 130828 0.68 0.682524
Target:  5'- cGCuCGaGGCGCGGCgcggagucgUCGCCGucgGCggCGCg -3'
miRNA:   3'- -CG-GCaCCGCGCCG---------AGCGGU---UGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 138137 0.68 0.682524
Target:  5'- gGCCGUGGaCGCGGaggaCCGGCG-CGCg -3'
miRNA:   3'- -CGGCACC-GCGCCgagcGGUUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 109248 0.68 0.672479
Target:  5'- cGCCGcGGUcuccgcugGCGGC-C-CCGACGUCGCu -3'
miRNA:   3'- -CGGCaCCG--------CGCCGaGcGGUUGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 121783 0.68 0.672479
Target:  5'- cGCgGUGGUGCGcgaGCUgGCCccacGCGUCAa -3'
miRNA:   3'- -CGgCACCGCGC---CGAgCGGu---UGUAGUg -5'
29540 5' -58.5 NC_006151.1 + 58751 0.68 0.672479
Target:  5'- cGCCGcGGCcaccGCGGC-CGCCGAgccCGUcCACg -3'
miRNA:   3'- -CGGCaCCG----CGCCGaGCGGUU---GUA-GUG- -5'
29540 5' -58.5 NC_006151.1 + 80832 0.68 0.672479
Target:  5'- gGCCGggacacgGGCGCGaGCcgCGUCGACGUgaACg -3'
miRNA:   3'- -CGGCa------CCGCGC-CGa-GCGGUUGUAg-UG- -5'
29540 5' -58.5 NC_006151.1 + 89966 0.68 0.672479
Target:  5'- aCCG-GGCGCGGCUgG-CGACGUaggugCACg -3'
miRNA:   3'- cGGCaCCGCGCCGAgCgGUUGUA-----GUG- -5'
29540 5' -58.5 NC_006151.1 + 100656 0.68 0.672479
Target:  5'- cGCCGUcgacGaGCGCGGCgUGCUGGCgcucGUCGCg -3'
miRNA:   3'- -CGGCA----C-CGCGCCGaGCGGUUG----UAGUG- -5'
29540 5' -58.5 NC_006151.1 + 135491 0.68 0.672479
Target:  5'- gGCCaGgcgGcGCGCGGcCUCgGCCGAggcCAUCACg -3'
miRNA:   3'- -CGG-Ca--C-CGCGCC-GAG-CGGUU---GUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 136590 0.68 0.666436
Target:  5'- aCCGc-GCGCGGCUCcgcgagcaccuggacGCCGucaACGUCACg -3'
miRNA:   3'- cGGCacCGCGCCGAG---------------CGGU---UGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 122677 0.68 0.652301
Target:  5'- cGCCGaggUGcGCGCGGCg-GCCGugGagcUCGCg -3'
miRNA:   3'- -CGGC---AC-CGCGCCGagCGGUugU---AGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.