miRNA display CGI


Results 41 - 60 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29540 5' -58.5 NC_006151.1 + 48850 0.68 0.686531
Target:  5'- cUCGUGGCGCGcGCugcuggagcccgagaUCGCCAaGCcgUACg -3'
miRNA:   3'- cGGCACCGCGC-CG---------------AGCGGU-UGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 49249 0.71 0.493435
Target:  5'- gGCUG-GGCGCGGCUCGUgcgCGcCGUCGu -3'
miRNA:   3'- -CGGCaCCGCGCCGAGCG---GUuGUAGUg -5'
29540 5' -58.5 NC_006151.1 + 49945 0.66 0.806206
Target:  5'- cGCCGggaccUGGcCGCGGCccUgGCCGGCcuccccGUCGCc -3'
miRNA:   3'- -CGGC-----ACC-GCGCCG--AgCGGUUG------UAGUG- -5'
29540 5' -58.5 NC_006151.1 + 50011 0.66 0.779289
Target:  5'- cGCCGcGcGCGCGGCcCGCgCGGCGcccccgggCGCg -3'
miRNA:   3'- -CGGCaC-CGCGCCGaGCG-GUUGUa-------GUG- -5'
29540 5' -58.5 NC_006151.1 + 52387 0.66 0.779289
Target:  5'- cCCGcgGGgGCGGCgggCGCC-GCcgCGCc -3'
miRNA:   3'- cGGCa-CCgCGCCGa--GCGGuUGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 53965 0.7 0.531987
Target:  5'- cGCCaGcGGCgGCGGCgccucCGCgGGCGUCGCg -3'
miRNA:   3'- -CGG-CaCCG-CGCCGa----GCGgUUGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 54415 0.72 0.46538
Target:  5'- cGCCGaggcgcUGGCGCGGCgcuUCGgCGACGagGCg -3'
miRNA:   3'- -CGGC------ACCGCGCCG---AGCgGUUGUagUG- -5'
29540 5' -58.5 NC_006151.1 + 54719 0.69 0.63206
Target:  5'- gGCCuggacgagGUGGC-CGaGCUCGCCGaggccaugcgcgGCGUCACc -3'
miRNA:   3'- -CGG--------CACCGcGC-CGAGCGGU------------UGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 54876 0.72 0.424046
Target:  5'- cGCUGUGGCGCGacGCgagcugcucuuugacUCGCCGGCGcagCGCg -3'
miRNA:   3'- -CGGCACCGCGC--CG---------------AGCGGUUGUa--GUG- -5'
29540 5' -58.5 NC_006151.1 + 57194 0.7 0.561596
Target:  5'- gGUCGUGGCGCGaggcgaaggcccGCUCGaCGAggcCGUCGCa -3'
miRNA:   3'- -CGGCACCGCGC------------CGAGCgGUU---GUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 57528 0.73 0.378442
Target:  5'- gGCCGccuccGGCGCGGC-CGCgGGCAcgUCGCc -3'
miRNA:   3'- -CGGCa----CCGCGCCGaGCGgUUGU--AGUG- -5'
29540 5' -58.5 NC_006151.1 + 57605 0.68 0.652301
Target:  5'- gGCCGgccucGGcCGCGGC-CGCCucGACggCGCg -3'
miRNA:   3'- -CGGCa----CC-GCGCCGaGCGG--UUGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 58004 0.68 0.682524
Target:  5'- cGCCuccGGCGCGGCcgCGgCCAccuugauCGUCGCa -3'
miRNA:   3'- -CGGca-CCGCGCCGa-GC-GGUu------GUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 58373 0.67 0.750258
Target:  5'- cGUCGUGaucucgacggagaGCGCGGCgcaGCCGGcCAUgGCg -3'
miRNA:   3'- -CGGCAC-------------CGCGCCGag-CGGUU-GUAgUG- -5'
29540 5' -58.5 NC_006151.1 + 58439 0.75 0.310083
Target:  5'- cGCCucgGUGGCGUGcGCgCGCgCGGCGUCGCg -3'
miRNA:   3'- -CGG---CACCGCGC-CGaGCG-GUUGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 58567 0.67 0.712381
Target:  5'- cGCCGc--CGCcGCcCGCCGGCGUCGCg -3'
miRNA:   3'- -CGGCaccGCGcCGaGCGGUUGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 58652 0.77 0.234154
Target:  5'- cGCCGggagGGCGCGGCgcagggcCGCCAugAcCGCg -3'
miRNA:   3'- -CGGCa---CCGCGCCGa------GCGGUugUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 58687 0.69 0.646232
Target:  5'- cGCCGUGcGCGCcgcgccacagcgccgGGUcCGCCAGCGcccccgugccgcUCGCg -3'
miRNA:   3'- -CGGCAC-CGCG---------------CCGaGCGGUUGU------------AGUG- -5'
29540 5' -58.5 NC_006151.1 + 58751 0.68 0.672479
Target:  5'- cGCCGcGGCcaccGCGGC-CGCCGAgccCGUcCACg -3'
miRNA:   3'- -CGGCaCCG----CGCCGaGCGGUU---GUA-GUG- -5'
29540 5' -58.5 NC_006151.1 + 59131 0.7 0.57157
Target:  5'- uGCCGgugggUGGCGCccgcgGGCggguccagGCCGGCGUCGCg -3'
miRNA:   3'- -CGGC-----ACCGCG-----CCGag------CGGUUGUAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.