miRNA display CGI


Results 61 - 80 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29540 5' -58.5 NC_006151.1 + 60629 0.69 0.63206
Target:  5'- cGCCGUcgucggGGCGgGGCUC-CCGGCccgCGCc -3'
miRNA:   3'- -CGGCA------CCGCgCCGAGcGGUUGua-GUG- -5'
29540 5' -58.5 NC_006151.1 + 61771 0.66 0.788402
Target:  5'- gGCCGUGGUgcuGCGGCgcgaggccgGCCGGC-UgGCg -3'
miRNA:   3'- -CGGCACCG---CGCCGag-------CGGUUGuAgUG- -5'
29540 5' -58.5 NC_006151.1 + 62115 0.7 0.568573
Target:  5'- gGCCGUGGUcgggcugaugcucgGCGuGCUCcugGCCAACAgcuucCACa -3'
miRNA:   3'- -CGGCACCG--------------CGC-CGAG---CGGUUGUa----GUG- -5'
29540 5' -58.5 NC_006151.1 + 62433 0.66 0.788402
Target:  5'- cGUCGUGcGCcUGGUccgCGCCuGCAUCGCc -3'
miRNA:   3'- -CGGCAC-CGcGCCGa--GCGGuUGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 63175 0.67 0.731966
Target:  5'- gGCCuuggGGCGCacggggccgGGCUCGCCGAC--CAUg -3'
miRNA:   3'- -CGGca--CCGCG---------CCGAGCGGUUGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 63584 0.73 0.386636
Target:  5'- uGgCGUGGCGCgGGUUCGCgAACAcgggCACc -3'
miRNA:   3'- -CgGCACCGCG-CCGAGCGgUUGUa---GUG- -5'
29540 5' -58.5 NC_006151.1 + 63749 0.68 0.692529
Target:  5'- gGCgCGUcGGCGgGGCguccucggCGCCcccGCGUCGCc -3'
miRNA:   3'- -CG-GCA-CCGCgCCGa-------GCGGu--UGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 63996 0.69 0.642184
Target:  5'- uCCGUcugcgugcGGUGCGGCgccaggCGCCcgaucGCGUCGCg -3'
miRNA:   3'- cGGCA--------CCGCGCCGa-----GCGGu----UGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 64114 0.66 0.788402
Target:  5'- gGUCGUGGCccgGCGGUggcgCGCCcgucuCGUCGa -3'
miRNA:   3'- -CGGCACCG---CGCCGa---GCGGuu---GUAGUg -5'
29540 5' -58.5 NC_006151.1 + 64385 0.69 0.621935
Target:  5'- gGCCGUGGCcagcccGCGGCgcagcagCGUCcACAggUCGCu -3'
miRNA:   3'- -CGGCACCG------CGCCGa------GCGGuUGU--AGUG- -5'
29540 5' -58.5 NC_006151.1 + 64478 0.66 0.788402
Target:  5'- cGCCGcGGCG-GGgaCGCCcGCGggCGCg -3'
miRNA:   3'- -CGGCaCCGCgCCgaGCGGuUGUa-GUG- -5'
29540 5' -58.5 NC_006151.1 + 64558 0.76 0.276359
Target:  5'- gGCCGUGGCGCGccaGCUCGaCgAGCAggucgugCACg -3'
miRNA:   3'- -CGGCACCGCGC---CGAGC-GgUUGUa------GUG- -5'
29540 5' -58.5 NC_006151.1 + 64631 0.67 0.722211
Target:  5'- gGCCGcggGGCGCGGCgccccgCGCaggAACcgCAg -3'
miRNA:   3'- -CGGCa--CCGCGCCGa-----GCGg--UUGuaGUg -5'
29540 5' -58.5 NC_006151.1 + 64784 0.73 0.394946
Target:  5'- uGCCGgGGCGCGaGCUgGCCA-CGcccUCGCg -3'
miRNA:   3'- -CGGCaCCGCGC-CGAgCGGUuGU---AGUG- -5'
29540 5' -58.5 NC_006151.1 + 64959 0.66 0.770047
Target:  5'- cGCUGcgGGCGCaGGCcgagCGCCAcguccaGCAgCACg -3'
miRNA:   3'- -CGGCa-CCGCG-CCGa---GCGGU------UGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 65818 0.72 0.429314
Target:  5'- cGCgGUGGauggGCGGCcgCGCCAGCGcggcccggcUCACg -3'
miRNA:   3'- -CGgCACCg---CGCCGa-GCGGUUGU---------AGUG- -5'
29540 5' -58.5 NC_006151.1 + 66663 0.66 0.797377
Target:  5'- cGCCaUGGCgGCGGUggaCGCCAugcggACGUC-Cg -3'
miRNA:   3'- -CGGcACCG-CGCCGa--GCGGU-----UGUAGuG- -5'
29540 5' -58.5 NC_006151.1 + 67095 0.71 0.483995
Target:  5'- uCCGaGGaCGCGGUgcgccacuuUCGCCAgcGCGUCACg -3'
miRNA:   3'- cGGCaCC-GCGCCG---------AGCGGU--UGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 67868 0.69 0.642184
Target:  5'- cGCCGaggUGGCGCGcGCgccaGCCcGCGgggCACa -3'
miRNA:   3'- -CGGC---ACCGCGC-CGag--CGGuUGUa--GUG- -5'
29540 5' -58.5 NC_006151.1 + 67961 0.69 0.615864
Target:  5'- cGCCGggGGCcaggaccacgcagucGCGGCggccCGCCGGCGcCGCg -3'
miRNA:   3'- -CGGCa-CCG---------------CGCCGa---GCGGUUGUaGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.