miRNA display CGI


Results 101 - 120 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29540 5' -58.5 NC_006151.1 + 75761 0.67 0.711394
Target:  5'- cGCCGUaGGUcacgggcacguccGCGuGCgugucCGCCAGCGUCAg -3'
miRNA:   3'- -CGGCA-CCG-------------CGC-CGa----GCGGUUGUAGUg -5'
29540 5' -58.5 NC_006151.1 + 75820 0.71 0.522239
Target:  5'- aGCCGcUGGCGCacGC-CgGCCGugGUCACa -3'
miRNA:   3'- -CGGC-ACCGCGc-CGaG-CGGUugUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 76340 0.69 0.642184
Target:  5'- gGCCG-GGUGCGGCcCGUCGcgcGCgAUCAUc -3'
miRNA:   3'- -CGGCaCCGCGCCGaGCGGU---UG-UAGUG- -5'
29540 5' -58.5 NC_006151.1 + 78137 0.69 0.615864
Target:  5'- gGCCGcgGGCGCcucggacgacgccucGGC-CGCCGugGUCGa -3'
miRNA:   3'- -CGGCa-CCGCG---------------CCGaGCGGUugUAGUg -5'
29540 5' -58.5 NC_006151.1 + 78665 0.68 0.70645
Target:  5'- gGCCGgGGCGCGGgUgcuggacgggcucuaCGCCGGCcggggccucGUCGCc -3'
miRNA:   3'- -CGGCaCCGCGCCgA---------------GCGGUUG---------UAGUG- -5'
29540 5' -58.5 NC_006151.1 + 78835 0.67 0.751211
Target:  5'- aGCUGUuugGGCGCGcCUgacccgCGCCAACAUCu- -3'
miRNA:   3'- -CGGCA---CCGCGCcGA------GCGGUUGUAGug -5'
29540 5' -58.5 NC_006151.1 + 79115 0.67 0.751211
Target:  5'- cGUCGUGGCugggccaCGGC-CGCCccauCGUCGCc -3'
miRNA:   3'- -CGGCACCGc------GCCGaGCGGuu--GUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 80832 0.68 0.672479
Target:  5'- gGCCGggacacgGGCGCGaGCcgCGUCGACGUgaACg -3'
miRNA:   3'- -CGGCa------CCGCGC-CGa-GCGGUUGUAg-UG- -5'
29540 5' -58.5 NC_006151.1 + 81392 0.7 0.531987
Target:  5'- cGCCGcGGCGCccaGGUUgGCCAGgGUgGCg -3'
miRNA:   3'- -CGGCaCCGCG---CCGAgCGGUUgUAgUG- -5'
29540 5' -58.5 NC_006151.1 + 81427 0.66 0.806206
Target:  5'- cGCCGaGGuCGCGGCgcagCGagaCGGCG-CACg -3'
miRNA:   3'- -CGGCaCC-GCGCCGa---GCg--GUUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 81566 0.78 0.212555
Target:  5'- gGCCGUGGUGCGGagcaggguCUCGCgcGCGUCGCc -3'
miRNA:   3'- -CGGCACCGCGCC--------GAGCGguUGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 81717 0.66 0.770047
Target:  5'- aGCCGgGGCGcCGGgucCUCGCCGAagGUC-Ca -3'
miRNA:   3'- -CGGCaCCGC-GCC---GAGCGGUUg-UAGuG- -5'
29540 5' -58.5 NC_006151.1 + 82257 0.69 0.601716
Target:  5'- gGCCGaGGaa-GGcCUCGcCCAGCGUCACg -3'
miRNA:   3'- -CGGCaCCgcgCC-GAGC-GGUUGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 83231 0.69 0.63206
Target:  5'- gGUCGaaGCGCGGCgcgCGCCcccaguCGUCGCg -3'
miRNA:   3'- -CGGCacCGCGCCGa--GCGGuu----GUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 84330 0.77 0.223132
Target:  5'- aCCGU-GCGCGGcCUCGCCGaguACGUCGCc -3'
miRNA:   3'- cGGCAcCGCGCC-GAGCGGU---UGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 84617 0.7 0.561596
Target:  5'- cGCCGccGCGCGGC-CGCC-GCggCGCu -3'
miRNA:   3'- -CGGCacCGCGCCGaGCGGuUGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 85173 0.72 0.429314
Target:  5'- cGCCGcgGGCGCcGC-CGCCccgcugGGCAUCGCg -3'
miRNA:   3'- -CGGCa-CCGCGcCGaGCGG------UUGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 85628 0.69 0.621935
Target:  5'- cGCCGccGCGCGGC--GCCAGCGgggaCGCg -3'
miRNA:   3'- -CGGCacCGCGCCGagCGGUUGUa---GUG- -5'
29540 5' -58.5 NC_006151.1 + 86552 0.69 0.621935
Target:  5'- cGCCGUGGCGCcGUUcCGgCAGCucucggCGCg -3'
miRNA:   3'- -CGGCACCGCGcCGA-GCgGUUGua----GUG- -5'
29540 5' -58.5 NC_006151.1 + 86596 0.71 0.483995
Target:  5'- aGCUGcUGGCGCGcGC-CGCCGA-GUCGCc -3'
miRNA:   3'- -CGGC-ACCGCGC-CGaGCGGUUgUAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.