Results 121 - 140 of 237 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29540 | 5' | -58.5 | NC_006151.1 | + | 87616 | 0.74 | 0.331779 |
Target: 5'- cGCCGUGGCcugccagcGCGGC--GCCGACAUCu- -3' miRNA: 3'- -CGGCACCG--------CGCCGagCGGUUGUAGug -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 88875 | 0.67 | 0.735844 |
Target: 5'- uCCG-GGCGCgggGGCUCGUCAaaguacucggggucgGCGUCGg -3' miRNA: 3'- cGGCaCCGCG---CCGAGCGGU---------------UGUAGUg -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 89054 | 0.67 | 0.759743 |
Target: 5'- cCCGU-GCGCGGUggccuugUCGCCGugGaCGCg -3' miRNA: 3'- cGGCAcCGCGCCG-------AGCGGUugUaGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 89279 | 0.68 | 0.650279 |
Target: 5'- cGCCGcGGCGaUGGCcgccgcguagagCGCCAgcagagcgaGCAUCGCa -3' miRNA: 3'- -CGGCaCCGC-GCCGa-----------GCGGU---------UGUAGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 89966 | 0.68 | 0.672479 |
Target: 5'- aCCG-GGCGCGGCUgG-CGACGUaggugCACg -3' miRNA: 3'- cGGCaCCGCGCCGAgCgGUUGUA-----GUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 90981 | 0.68 | 0.692529 |
Target: 5'- cGCCcUGGCGCcGCUgGCUGGCG-CGCu -3' miRNA: 3'- -CGGcACCGCGcCGAgCGGUUGUaGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 92171 | 0.71 | 0.483995 |
Target: 5'- gGCCGUGcGCGCcgacggcgacggGGC-CGCCGACG-CGCc -3' miRNA: 3'- -CGGCAC-CGCG------------CCGaGCGGUUGUaGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 92681 | 0.7 | 0.561596 |
Target: 5'- gGCCGgGGaCGCGcGCUCGCC-GCG-CGCc -3' miRNA: 3'- -CGGCaCC-GCGC-CGAGCGGuUGUaGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 93567 | 0.66 | 0.779289 |
Target: 5'- cGCCGcgggGGCG-GGCgCGCCAaagaGCGggcUCGCg -3' miRNA: 3'- -CGGCa---CCGCgCCGaGCGGU----UGU---AGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 95394 | 0.67 | 0.751211 |
Target: 5'- cGCCG-GGCGUGGCcCGCUg----CACg -3' miRNA: 3'- -CGGCaCCGCGCCGaGCGGuuguaGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 95845 | 0.67 | 0.722211 |
Target: 5'- cCCGUGGgGC-GCUCGCU---GUCGCu -3' miRNA: 3'- cGGCACCgCGcCGAGCGGuugUAGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 96216 | 0.73 | 0.386636 |
Target: 5'- cGCCGUGGCgGCGGC-CGCggcgaGGCG-CACa -3' miRNA: 3'- -CGGCACCG-CGCCGaGCGg----UUGUaGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 96599 | 0.81 | 0.128728 |
Target: 5'- cGCCG-GGCGCgGGCgCGCCGACGUCGu -3' miRNA: 3'- -CGGCaCCGCG-CCGaGCGGUUGUAGUg -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 96869 | 0.72 | 0.429314 |
Target: 5'- cGCCG-GGCGCGGCgcgCGCgGggGCAUgAUg -3' miRNA: 3'- -CGGCaCCGCGCCGa--GCGgU--UGUAgUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 97370 | 0.67 | 0.741635 |
Target: 5'- gGCgGcgGGCGCGGCgggggCGUCGGCcUCGu -3' miRNA: 3'- -CGgCa-CCGCGCCGa----GCGGUUGuAGUg -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 97567 | 0.71 | 0.522239 |
Target: 5'- cGCCGaGGCGCaGCUCGCgGuccACGUC-Ca -3' miRNA: 3'- -CGGCaCCGCGcCGAGCGgU---UGUAGuG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 97992 | 0.67 | 0.751211 |
Target: 5'- uGCCGggcGGCGUGGC-CGCguaGGCggCGCc -3' miRNA: 3'- -CGGCa--CCGCGCCGaGCGg--UUGuaGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 98060 | 0.71 | 0.474642 |
Target: 5'- aGCCccgGGCGCucggccuggGGCUcgcaaaagucCGCCAGCGUCACc -3' miRNA: 3'- -CGGca-CCGCG---------CCGA----------GCGGUUGUAGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 98212 | 0.67 | 0.760685 |
Target: 5'- gGUCGaGuGCGCGGCggCGCCcGCG-CGCg -3' miRNA: 3'- -CGGCaC-CGCGCCGa-GCGGuUGUaGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 98648 | 0.67 | 0.751211 |
Target: 5'- gGCCcuggcgGGCGCGcGCUCcGCCGACG--ACg -3' miRNA: 3'- -CGGca----CCGCGC-CGAG-CGGUUGUagUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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