miRNA display CGI


Results 21 - 40 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29540 5' -58.5 NC_006151.1 + 130285 0.72 0.46538
Target:  5'- gGCCGcgGGCGCGcGC-CgGCCGACggCGCg -3'
miRNA:   3'- -CGGCa-CCGCGC-CGaG-CGGUUGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 130245 0.67 0.751211
Target:  5'- aGCCGcagaaGGCGCGGaagagGCCGGCG-CGCg -3'
miRNA:   3'- -CGGCa----CCGCGCCgag--CGGUUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 130131 0.69 0.611818
Target:  5'- gGCCGUgGGCGCG---CGCCAGCAggUACa -3'
miRNA:   3'- -CGGCA-CCGCGCcgaGCGGUUGUa-GUG- -5'
29540 5' -58.5 NC_006151.1 + 129869 0.67 0.759743
Target:  5'- cCCGUGGCGUcGCgCGCCGccGCcaccucgGUCGCg -3'
miRNA:   3'- cGGCACCGCGcCGaGCGGU--UG-------UAGUG- -5'
29540 5' -58.5 NC_006151.1 + 129694 0.66 0.806206
Target:  5'- cGCCGUGGacCGCGGCgccgaGCaggcaguugagCAGCAgguUCGCg -3'
miRNA:   3'- -CGGCACC--GCGCCGag---CG-----------GUUGU---AGUG- -5'
29540 5' -58.5 NC_006151.1 + 129122 0.69 0.601716
Target:  5'- gGCCGaGGCGCgcugGGCgccaaagagCGCCGGCG-CACa -3'
miRNA:   3'- -CGGCaCCGCG----CCGa--------GCGGUUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 129050 0.73 0.386636
Target:  5'- cUCGcGGUGCGGCUCcgccgagcacGCCGugAUCACg -3'
miRNA:   3'- cGGCaCCGCGCCGAG----------CGGUugUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 129005 0.68 0.702484
Target:  5'- cGCCGUGaugcccuucaGCGCGGC--GUCGGCcgCGCg -3'
miRNA:   3'- -CGGCAC----------CGCGCCGagCGGUUGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 128690 0.67 0.760685
Target:  5'- -aCGUGGC-CGcGUaCGCCAGCAUCuCg -3'
miRNA:   3'- cgGCACCGcGC-CGaGCGGUUGUAGuG- -5'
29540 5' -58.5 NC_006151.1 + 128493 0.7 0.551671
Target:  5'- cGUCGccGUGUGGCUCGUCAGCAcgagCACc -3'
miRNA:   3'- -CGGCacCGCGCCGAGCGGUUGUa---GUG- -5'
29540 5' -58.5 NC_006151.1 + 127858 0.67 0.751211
Target:  5'- cGCCGgagggGGCGCcGCcCGCCGcCGUcCACc -3'
miRNA:   3'- -CGGCa----CCGCGcCGaGCGGUuGUA-GUG- -5'
29540 5' -58.5 NC_006151.1 + 127569 0.66 0.797377
Target:  5'- cGCCGccGGCGCcucGUUCGCCGucccCGUCGg -3'
miRNA:   3'- -CGGCa-CCGCGc--CGAGCGGUu---GUAGUg -5'
29540 5' -58.5 NC_006151.1 + 125998 0.69 0.611818
Target:  5'- uGCUGcuGCGCGGCaUCGCCAACuUCu- -3'
miRNA:   3'- -CGGCacCGCGCCG-AGCGGUUGuAGug -5'
29540 5' -58.5 NC_006151.1 + 125466 0.7 0.581585
Target:  5'- cGCCGUGGCcaCGGCcgCGCuCGGCcagCGCg -3'
miRNA:   3'- -CGGCACCGc-GCCGa-GCG-GUUGua-GUG- -5'
29540 5' -58.5 NC_006151.1 + 124075 0.7 0.531987
Target:  5'- gGCCGUGcGCGCGGCcgCGaCCgAGCGggacCGCu -3'
miRNA:   3'- -CGGCAC-CGCGCCGa-GC-GG-UUGUa---GUG- -5'
29540 5' -58.5 NC_006151.1 + 123903 0.74 0.331779
Target:  5'- cGCCGUgcGGCGCGGCg-GCCGugA-CGCg -3'
miRNA:   3'- -CGGCA--CCGCGCCGagCGGUugUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 123215 0.67 0.751211
Target:  5'- -aCGUGGCgGUGGC-CGCCGGguUcCGCg -3'
miRNA:   3'- cgGCACCG-CGCCGaGCGGUUguA-GUG- -5'
29540 5' -58.5 NC_006151.1 + 123030 0.73 0.378442
Target:  5'- cGCCGUGGCGUgGGCggaccUGCCGGCcgCGg -3'
miRNA:   3'- -CGGCACCGCG-CCGa----GCGGUUGuaGUg -5'
29540 5' -58.5 NC_006151.1 + 122955 0.69 0.63206
Target:  5'- cGCCGcggggGGCGCGGa-CGCCGGCGaCGg -3'
miRNA:   3'- -CGGCa----CCGCGCCgaGCGGUUGUaGUg -5'
29540 5' -58.5 NC_006151.1 + 122677 0.68 0.652301
Target:  5'- cGCCGaggUGcGCGCGGCg-GCCGugGagcUCGCg -3'
miRNA:   3'- -CGGC---AC-CGCGCCGagCGGUugU---AGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.