miRNA display CGI


Results 101 - 120 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29540 5' -58.5 NC_006151.1 + 97992 0.67 0.751211
Target:  5'- uGCCGggcGGCGUGGC-CGCguaGGCggCGCc -3'
miRNA:   3'- -CGGCa--CCGCGCCGaGCGg--UUGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 97567 0.71 0.522239
Target:  5'- cGCCGaGGCGCaGCUCGCgGuccACGUC-Ca -3'
miRNA:   3'- -CGGCaCCGCGcCGAGCGgU---UGUAGuG- -5'
29540 5' -58.5 NC_006151.1 + 97370 0.67 0.741635
Target:  5'- gGCgGcgGGCGCGGCgggggCGUCGGCcUCGu -3'
miRNA:   3'- -CGgCa-CCGCGCCGa----GCGGUUGuAGUg -5'
29540 5' -58.5 NC_006151.1 + 96869 0.72 0.429314
Target:  5'- cGCCG-GGCGCGGCgcgCGCgGggGCAUgAUg -3'
miRNA:   3'- -CGGCaCCGCGCCGa--GCGgU--UGUAgUG- -5'
29540 5' -58.5 NC_006151.1 + 96599 0.81 0.128728
Target:  5'- cGCCG-GGCGCgGGCgCGCCGACGUCGu -3'
miRNA:   3'- -CGGCaCCGCG-CCGaGCGGUUGUAGUg -5'
29540 5' -58.5 NC_006151.1 + 96216 0.73 0.386636
Target:  5'- cGCCGUGGCgGCGGC-CGCggcgaGGCG-CACa -3'
miRNA:   3'- -CGGCACCG-CGCCGaGCGg----UUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 95845 0.67 0.722211
Target:  5'- cCCGUGGgGC-GCUCGCU---GUCGCu -3'
miRNA:   3'- cGGCACCgCGcCGAGCGGuugUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 95394 0.67 0.751211
Target:  5'- cGCCG-GGCGUGGCcCGCUg----CACg -3'
miRNA:   3'- -CGGCaCCGCGCCGaGCGGuuguaGUG- -5'
29540 5' -58.5 NC_006151.1 + 93567 0.66 0.779289
Target:  5'- cGCCGcgggGGCG-GGCgCGCCAaagaGCGggcUCGCg -3'
miRNA:   3'- -CGGCa---CCGCgCCGaGCGGU----UGU---AGUG- -5'
29540 5' -58.5 NC_006151.1 + 92681 0.7 0.561596
Target:  5'- gGCCGgGGaCGCGcGCUCGCC-GCG-CGCc -3'
miRNA:   3'- -CGGCaCC-GCGC-CGAGCGGuUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 92171 0.71 0.483995
Target:  5'- gGCCGUGcGCGCcgacggcgacggGGC-CGCCGACG-CGCc -3'
miRNA:   3'- -CGGCAC-CGCG------------CCGaGCGGUUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 90981 0.68 0.692529
Target:  5'- cGCCcUGGCGCcGCUgGCUGGCG-CGCu -3'
miRNA:   3'- -CGGcACCGCGcCGAgCGGUUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 89966 0.68 0.672479
Target:  5'- aCCG-GGCGCGGCUgG-CGACGUaggugCACg -3'
miRNA:   3'- cGGCaCCGCGCCGAgCgGUUGUA-----GUG- -5'
29540 5' -58.5 NC_006151.1 + 89279 0.68 0.650279
Target:  5'- cGCCGcGGCGaUGGCcgccgcguagagCGCCAgcagagcgaGCAUCGCa -3'
miRNA:   3'- -CGGCaCCGC-GCCGa-----------GCGGU---------UGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 89054 0.67 0.759743
Target:  5'- cCCGU-GCGCGGUggccuugUCGCCGugGaCGCg -3'
miRNA:   3'- cGGCAcCGCGCCG-------AGCGGUugUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 88875 0.67 0.735844
Target:  5'- uCCG-GGCGCgggGGCUCGUCAaaguacucggggucgGCGUCGg -3'
miRNA:   3'- cGGCaCCGCG---CCGAGCGGU---------------UGUAGUg -5'
29540 5' -58.5 NC_006151.1 + 87616 0.74 0.331779
Target:  5'- cGCCGUGGCcugccagcGCGGC--GCCGACAUCu- -3'
miRNA:   3'- -CGGCACCG--------CGCCGagCGGUUGUAGug -5'
29540 5' -58.5 NC_006151.1 + 86596 0.71 0.483995
Target:  5'- aGCUGcUGGCGCGcGC-CGCCGA-GUCGCc -3'
miRNA:   3'- -CGGC-ACCGCGC-CGaGCGGUUgUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 86552 0.69 0.621935
Target:  5'- cGCCGUGGCGCcGUUcCGgCAGCucucggCGCg -3'
miRNA:   3'- -CGGCACCGCGcCGA-GCgGUUGua----GUG- -5'
29540 5' -58.5 NC_006151.1 + 85628 0.69 0.621935
Target:  5'- cGCCGccGCGCGGC--GCCAGCGgggaCGCg -3'
miRNA:   3'- -CGGCacCGCGCCGagCGGUUGUa---GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.