miRNA display CGI


Results 41 - 60 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29540 5' -58.5 NC_006151.1 + 49945 0.66 0.806206
Target:  5'- cGCCGggaccUGGcCGCGGCccUgGCCGGCcuccccGUCGCc -3'
miRNA:   3'- -CGGC-----ACC-GCGCCG--AgCGGUUG------UAGUG- -5'
29540 5' -58.5 NC_006151.1 + 81427 0.66 0.806206
Target:  5'- cGCCGaGGuCGCGGCgcagCGagaCGGCG-CACg -3'
miRNA:   3'- -CGGCaCC-GCGCCGa---GCg--GUUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 111363 0.66 0.806206
Target:  5'- cGCgCGgGGCGagGGCcccUCGCCGuCGUCGCc -3'
miRNA:   3'- -CG-GCaCCGCg-CCG---AGCGGUuGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 113437 0.66 0.806206
Target:  5'- cGCCGcuuccGGCGCGGCgUGCuCAGCuacUCGg -3'
miRNA:   3'- -CGGCa----CCGCGCCGaGCG-GUUGu--AGUg -5'
29540 5' -58.5 NC_006151.1 + 129694 0.66 0.806206
Target:  5'- cGCCGUGGacCGCGGCgccgaGCaggcaguugagCAGCAgguUCGCg -3'
miRNA:   3'- -CGGCACC--GCGCCGag---CG-----------GUUGU---AGUG- -5'
29540 5' -58.5 NC_006151.1 + 99628 0.66 0.788402
Target:  5'- cGCCGcgcgcgaGGCccucaacacGUGGCUCGCCuuCcgCGCg -3'
miRNA:   3'- -CGGCa------CCG---------CGCCGAGCGGuuGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 102409 0.66 0.788402
Target:  5'- cGCgCGUcGCGCGGCcCGCgAACGagGCc -3'
miRNA:   3'- -CG-GCAcCGCGCCGaGCGgUUGUagUG- -5'
29540 5' -58.5 NC_006151.1 + 100230 0.66 0.779289
Target:  5'- cGCCGUGGCcgagcgcgugGUGGCgcucgagCGCCucu-UCACc -3'
miRNA:   3'- -CGGCACCG----------CGCCGa------GCGGuuguAGUG- -5'
29540 5' -58.5 NC_006151.1 + 109554 0.66 0.779289
Target:  5'- cGCCGUGGaCGUGGCccgaGCCGAgGg-ACu -3'
miRNA:   3'- -CGGCACC-GCGCCGag--CGGUUgUagUG- -5'
29540 5' -58.5 NC_006151.1 + 50011 0.66 0.779289
Target:  5'- cGCCGcGcGCGCGGCcCGCgCGGCGcccccgggCGCg -3'
miRNA:   3'- -CGGCaC-CGCGCCGaGCG-GUUGUa-------GUG- -5'
29540 5' -58.5 NC_006151.1 + 52387 0.66 0.779289
Target:  5'- cCCGcgGGgGCGGCgggCGCC-GCcgCGCc -3'
miRNA:   3'- cGGCa-CCgCGCCGa--GCGGuUGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 5337 0.66 0.785682
Target:  5'- gGCCGcGGCGgagggcgcccucucCGGCgcggCGCCGGCGggGCu -3'
miRNA:   3'- -CGGCaCCGC--------------GCCGa---GCGGUUGUagUG- -5'
29540 5' -58.5 NC_006151.1 + 103488 0.66 0.787496
Target:  5'- cGCUGUGGCGCcugguGGCgCGCUaccgcgagcugcuGACGUC-Cg -3'
miRNA:   3'- -CGGCACCGCG-----CCGaGCGG-------------UUGUAGuG- -5'
29540 5' -58.5 NC_006151.1 + 61771 0.66 0.788402
Target:  5'- gGCCGUGGUgcuGCGGCgcgaggccgGCCGGC-UgGCg -3'
miRNA:   3'- -CGGCACCG---CGCCGag-------CGGUUGuAgUG- -5'
29540 5' -58.5 NC_006151.1 + 64114 0.66 0.788402
Target:  5'- gGUCGUGGCccgGCGGUggcgCGCCcgucuCGUCGa -3'
miRNA:   3'- -CGGCACCG---CGCCGa---GCGGuu---GUAGUg -5'
29540 5' -58.5 NC_006151.1 + 664 0.66 0.788402
Target:  5'- gGCCGgGGCG-GGCUCcGCgGAUcgCAUc -3'
miRNA:   3'- -CGGCaCCGCgCCGAG-CGgUUGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 4279 0.66 0.788402
Target:  5'- cGCCGcGGCaggccaggacGCaGGCgucCGCCAGC-UCGCg -3'
miRNA:   3'- -CGGCaCCG----------CG-CCGa--GCGGUUGuAGUG- -5'
29540 5' -58.5 NC_006151.1 + 62433 0.66 0.788402
Target:  5'- cGUCGUGcGCcUGGUccgCGCCuGCAUCGCc -3'
miRNA:   3'- -CGGCAC-CGcGCCGa--GCGGuUGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 64478 0.66 0.788402
Target:  5'- cGCCGcGGCG-GGgaCGCCcGCGggCGCg -3'
miRNA:   3'- -CGGCaCCGCgCCgaGCGGuUGUa-GUG- -5'
29540 5' -58.5 NC_006151.1 + 69971 0.66 0.788402
Target:  5'- gGCCGcgcgGGCGCuGCagcggCGgCAGCGUCAg -3'
miRNA:   3'- -CGGCa---CCGCGcCGa----GCgGUUGUAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.