Results 101 - 120 of 237 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29540 | 5' | -58.5 | NC_006151.1 | + | 117202 | 0.67 | 0.751211 |
Target: 5'- cGUCGUaguaguagacgGGCGCGGCgUCGaCGACG-CGCg -3' miRNA: 3'- -CGGCA-----------CCGCGCCG-AGCgGUUGUaGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 104067 | 0.67 | 0.751211 |
Target: 5'- gGCCGacgcGGCGCuGCgccgCGCCgAGCAgCACg -3' miRNA: 3'- -CGGCa---CCGCGcCGa---GCGG-UUGUaGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 99346 | 0.67 | 0.751211 |
Target: 5'- cGCCGUcGGCugcacgGCGGUcgUCGgCGGCGUCGu -3' miRNA: 3'- -CGGCA-CCG------CGCCG--AGCgGUUGUAGUg -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 98648 | 0.67 | 0.751211 |
Target: 5'- gGCCcuggcgGGCGCGcGCUCcGCCGACG--ACg -3' miRNA: 3'- -CGGca----CCGCGC-CGAG-CGGUUGUagUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 97992 | 0.67 | 0.751211 |
Target: 5'- uGCCGggcGGCGUGGC-CGCguaGGCggCGCc -3' miRNA: 3'- -CGGCa--CCGCGCCGaGCGg--UUGuaGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 73688 | 0.67 | 0.764444 |
Target: 5'- cUCGUcGGCGCGGCUCugcgccgcgugcuggGCCAcggGCuggCGCa -3' miRNA: 3'- cGGCA-CCGCGCCGAG---------------CGGU---UGua-GUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 37361 | 0.66 | 0.770047 |
Target: 5'- aGCCcUGGCcCGGCUCcgacccuccgGCCGACGgcCGCg -3' miRNA: 3'- -CGGcACCGcGCCGAG----------CGGUUGUa-GUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 19271 | 0.66 | 0.779289 |
Target: 5'- gGCuCGUGGCGCgcggGGCccaccgggGCCAGCggCGCg -3' miRNA: 3'- -CG-GCACCGCG----CCGag------CGGUUGuaGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 99674 | 0.66 | 0.779289 |
Target: 5'- aGCCGcUGGgGCcuGCgCGCCGACggCGCc -3' miRNA: 3'- -CGGC-ACCgCGc-CGaGCGGUUGuaGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 68768 | 0.66 | 0.779289 |
Target: 5'- gGCgGUGGCGCGcGCggcgaggugCGCCGccgcggcCGUCAUc -3' miRNA: 3'- -CGgCACCGCGC-CGa--------GCGGUu------GUAGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 18990 | 0.66 | 0.779289 |
Target: 5'- aGgCGUacGCGCGGCgCGCCAccaGCcgCGCg -3' miRNA: 3'- -CgGCAc-CGCGCCGaGCGGU---UGuaGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 71972 | 0.66 | 0.770977 |
Target: 5'- uGUCGcGGUGCGGCgggggcagcugguagCGCCGGcCGUUGCu -3' miRNA: 3'- -CGGCaCCGCGCCGa--------------GCGGUU-GUAGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 142985 | 0.66 | 0.770047 |
Target: 5'- uGCCGcgGGUG-GGCcCGaCCGcaGCAUCGCg -3' miRNA: 3'- -CGGCa-CCGCgCCGaGC-GGU--UGUAGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 135814 | 0.66 | 0.770047 |
Target: 5'- cGCCGaGGCcgagcuuuuaGCGcGC-CGCCccGGCGUCACg -3' miRNA: 3'- -CGGCaCCG----------CGC-CGaGCGG--UUGUAGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 64959 | 0.66 | 0.770047 |
Target: 5'- cGCUGcgGGCGCaGGCcgagCGCCAcguccaGCAgCACg -3' miRNA: 3'- -CGGCa-CCGCG-CCGa---GCGGU------UGUaGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 137408 | 0.66 | 0.770047 |
Target: 5'- cGCCGgggGGCGCc-CUCGCCGcCGcCGCg -3' miRNA: 3'- -CGGCa--CCGCGccGAGCGGUuGUaGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 121426 | 0.66 | 0.770047 |
Target: 5'- -aCGUcGCGgGGCUcgCGCCGGCcUCGCu -3' miRNA: 3'- cgGCAcCGCgCCGA--GCGGUUGuAGUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 106675 | 0.66 | 0.770047 |
Target: 5'- gGCCGcGGCGCucGGCgcgccgggCGCCGGCGaccugUACg -3' miRNA: 3'- -CGGCaCCGCG--CCGa-------GCGGUUGUa----GUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 103295 | 0.66 | 0.770047 |
Target: 5'- -aCGcGcGCGCGGCUCGCgCGGCGcgACg -3' miRNA: 3'- cgGCaC-CGCGCCGAGCG-GUUGUagUG- -5' |
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29540 | 5' | -58.5 | NC_006151.1 | + | 81717 | 0.66 | 0.770047 |
Target: 5'- aGCCGgGGCGcCGGgucCUCGCCGAagGUC-Ca -3' miRNA: 3'- -CGGCaCCGC-GCC---GAGCGGUUg-UAGuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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