miRNA display CGI


Results 21 - 40 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29540 5' -58.5 NC_006151.1 + 69971 0.66 0.788402
Target:  5'- gGCCGcgcgGGCGCuGCagcggCGgCAGCGUCAg -3'
miRNA:   3'- -CGGCa---CCGCGcCGa----GCgGUUGUAGUg -5'
29540 5' -58.5 NC_006151.1 + 102409 0.66 0.788402
Target:  5'- cGCgCGUcGCGCGGCcCGCgAACGagGCc -3'
miRNA:   3'- -CG-GCAcCGCGCCGaGCGgUUGUagUG- -5'
29540 5' -58.5 NC_006151.1 + 99628 0.66 0.788402
Target:  5'- cGCCGcgcgcgaGGCccucaacacGUGGCUCGCCuuCcgCGCg -3'
miRNA:   3'- -CGGCa------CCG---------CGCCGAGCGGuuGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 103488 0.66 0.787496
Target:  5'- cGCUGUGGCGCcugguGGCgCGCUaccgcgagcugcuGACGUC-Cg -3'
miRNA:   3'- -CGGCACCGCG-----CCGaGCGG-------------UUGUAGuG- -5'
29540 5' -58.5 NC_006151.1 + 5337 0.66 0.785682
Target:  5'- gGCCGcGGCGgagggcgcccucucCGGCgcggCGCCGGCGggGCu -3'
miRNA:   3'- -CGGCaCCGC--------------GCCGa---GCGGUUGUagUG- -5'
29540 5' -58.5 NC_006151.1 + 18990 0.66 0.779289
Target:  5'- aGgCGUacGCGCGGCgCGCCAccaGCcgCGCg -3'
miRNA:   3'- -CgGCAc-CGCGCCGaGCGGU---UGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 68768 0.66 0.779289
Target:  5'- gGCgGUGGCGCGcGCggcgaggugCGCCGccgcggcCGUCAUc -3'
miRNA:   3'- -CGgCACCGCGC-CGa--------GCGGUu------GUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 99674 0.66 0.779289
Target:  5'- aGCCGcUGGgGCcuGCgCGCCGACggCGCc -3'
miRNA:   3'- -CGGC-ACCgCGc-CGaGCGGUUGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 19271 0.66 0.779289
Target:  5'- gGCuCGUGGCGCgcggGGCccaccgggGCCAGCggCGCg -3'
miRNA:   3'- -CG-GCACCGCG----CCGag------CGGUUGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 71224 0.66 0.779289
Target:  5'- aCCGUGG-GCGcGCgCGCCGACcccGUCGa -3'
miRNA:   3'- cGGCACCgCGC-CGaGCGGUUG---UAGUg -5'
29540 5' -58.5 NC_006151.1 + 93567 0.66 0.779289
Target:  5'- cGCCGcgggGGCG-GGCgCGCCAaagaGCGggcUCGCg -3'
miRNA:   3'- -CGGCa---CCGCgCCGaGCGGU----UGU---AGUG- -5'
29540 5' -58.5 NC_006151.1 + 100230 0.66 0.779289
Target:  5'- cGCCGUGGCcgagcgcgugGUGGCgcucgagCGCCucu-UCACc -3'
miRNA:   3'- -CGGCACCG----------CGCCGa------GCGGuuguAGUG- -5'
29540 5' -58.5 NC_006151.1 + 109554 0.66 0.779289
Target:  5'- cGCCGUGGaCGUGGCccgaGCCGAgGg-ACu -3'
miRNA:   3'- -CGGCACC-GCGCCGag--CGGUUgUagUG- -5'
29540 5' -58.5 NC_006151.1 + 50011 0.66 0.779289
Target:  5'- cGCCGcGcGCGCGGCcCGCgCGGCGcccccgggCGCg -3'
miRNA:   3'- -CGGCaC-CGCGCCGaGCG-GUUGUa-------GUG- -5'
29540 5' -58.5 NC_006151.1 + 52387 0.66 0.779289
Target:  5'- cCCGcgGGgGCGGCgggCGCC-GCcgCGCc -3'
miRNA:   3'- cGGCa-CCgCGCCGa--GCGGuUGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 71972 0.66 0.770977
Target:  5'- uGUCGcGGUGCGGCgggggcagcugguagCGCCGGcCGUUGCu -3'
miRNA:   3'- -CGGCaCCGCGCCGa--------------GCGGUU-GUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 135814 0.66 0.770047
Target:  5'- cGCCGaGGCcgagcuuuuaGCGcGC-CGCCccGGCGUCACg -3'
miRNA:   3'- -CGGCaCCG----------CGC-CGaGCGG--UUGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 64959 0.66 0.770047
Target:  5'- cGCUGcgGGCGCaGGCcgagCGCCAcguccaGCAgCACg -3'
miRNA:   3'- -CGGCa-CCGCG-CCGa---GCGGU------UGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 137408 0.66 0.770047
Target:  5'- cGCCGgggGGCGCc-CUCGCCGcCGcCGCg -3'
miRNA:   3'- -CGGCa--CCGCGccGAGCGGUuGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 121426 0.66 0.770047
Target:  5'- -aCGUcGCGgGGCUcgCGCCGGCcUCGCu -3'
miRNA:   3'- cgGCAcCGCgCCGA--GCGGUUGuAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.