miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29541 3' -54.3 NC_006151.1 + 81207 0.66 0.937066
Target:  5'- gGGCcgCAgUCCGGGCGC-CGGCgC-GUGa -3'
miRNA:   3'- -UCGuaGU-AGGUCCGCGuGUUG-GaCAC- -5'
29541 3' -54.3 NC_006151.1 + 118156 0.66 0.931954
Target:  5'- cGGCGguggCG-CCGcuGGUGCGCGGCCUGa- -3'
miRNA:   3'- -UCGUa---GUaGGU--CCGCGUGUUGGACac -5'
29541 3' -54.3 NC_006151.1 + 132630 0.66 0.931954
Target:  5'- cGCGUCcgCCGucGGCGCcCgGACCUGg- -3'
miRNA:   3'- uCGUAGuaGGU--CCGCGuG-UUGGACac -5'
29541 3' -54.3 NC_006151.1 + 132684 0.66 0.931954
Target:  5'- cAGCAUgA-CCAGGCGCGCGuacagguCCUcGUu -3'
miRNA:   3'- -UCGUAgUaGGUCCGCGUGUu------GGA-CAc -5'
29541 3' -54.3 NC_006151.1 + 107412 0.66 0.928765
Target:  5'- cGGguUCGUCCcggacgacgacuuuGGCGC-CAACCcGUGg -3'
miRNA:   3'- -UCguAGUAGGu-------------CCGCGuGUUGGaCAC- -5'
29541 3' -54.3 NC_006151.1 + 58396 0.66 0.926589
Target:  5'- cGGCG-CAgccggCCAuGGCGCGCAGCUgggcGUGc -3'
miRNA:   3'- -UCGUaGUa----GGU-CCGCGUGUUGGa---CAC- -5'
29541 3' -54.3 NC_006151.1 + 63897 0.66 0.926589
Target:  5'- gGGCGcUCGagCAGGCGCGCGuacgcgcgcGCC-GUGg -3'
miRNA:   3'- -UCGU-AGUagGUCCGCGUGU---------UGGaCAC- -5'
29541 3' -54.3 NC_006151.1 + 75104 0.66 0.926589
Target:  5'- cGGCGUUG-CCGGGCGCcaGCAGCUgGUc -3'
miRNA:   3'- -UCGUAGUaGGUCCGCG--UGUUGGaCAc -5'
29541 3' -54.3 NC_006151.1 + 98360 0.66 0.92097
Target:  5'- gGGCGUgCGcgggcUCUGGGCGCGCGcgcugcGCCUGg- -3'
miRNA:   3'- -UCGUA-GU-----AGGUCCGCGUGU------UGGACac -5'
29541 3' -54.3 NC_006151.1 + 89701 0.66 0.915098
Target:  5'- cGCcgCGUCCAggaacccggcGGCGCcggccGCGGCCgcgGUGg -3'
miRNA:   3'- uCGuaGUAGGU----------CCGCG-----UGUUGGa--CAC- -5'
29541 3' -54.3 NC_006151.1 + 104466 0.67 0.911454
Target:  5'- gGGCuUCGUCgGGGCGgACAuggcgcacgugccccGCCUGg- -3'
miRNA:   3'- -UCGuAGUAGgUCCGCgUGU---------------UGGACac -5'
29541 3' -54.3 NC_006151.1 + 74067 0.67 0.908974
Target:  5'- uGGCGUCcgcGUCCAcGGCGaCGCAGgCguUGUGg -3'
miRNA:   3'- -UCGUAG---UAGGU-CCGC-GUGUUgG--ACAC- -5'
29541 3' -54.3 NC_006151.1 + 82079 0.67 0.9026
Target:  5'- cGCAUCGUCU-GGUGCAUGGCCc--- -3'
miRNA:   3'- uCGUAGUAGGuCCGCGUGUUGGacac -5'
29541 3' -54.3 NC_006151.1 + 95985 0.67 0.90064
Target:  5'- cAGCAggaugggggccaccUCGUCCGugauGGCGCGCAccGCCUccucgGUGg -3'
miRNA:   3'- -UCGU--------------AGUAGGU----CCGCGUGU--UGGA-----CAC- -5'
29541 3' -54.3 NC_006151.1 + 125491 0.67 0.895304
Target:  5'- cAGCG-CGUCUcGGCGCGCAugCUcggcgacGUGa -3'
miRNA:   3'- -UCGUaGUAGGuCCGCGUGUugGA-------CAC- -5'
29541 3' -54.3 NC_006151.1 + 57459 0.67 0.889114
Target:  5'- cGCGUCggCCAGGUGCcgcgccgcgGCGGCCUc-- -3'
miRNA:   3'- uCGUAGuaGGUCCGCG---------UGUUGGAcac -5'
29541 3' -54.3 NC_006151.1 + 59887 0.67 0.889114
Target:  5'- uGGCGaaggCGUCCAGGCGCGCGucGCg---- -3'
miRNA:   3'- -UCGUa---GUAGGUCCGCGUGU--UGgacac -5'
29541 3' -54.3 NC_006151.1 + 26362 0.67 0.889114
Target:  5'- gGGCcgCGUCgGGGCGCGCGuCCc--- -3'
miRNA:   3'- -UCGuaGUAGgUCCGCGUGUuGGacac -5'
29541 3' -54.3 NC_006151.1 + 100609 0.67 0.874669
Target:  5'- gAGCG-CuUCCuGGCGCGCuggGACCUGg- -3'
miRNA:   3'- -UCGUaGuAGGuCCGCGUG---UUGGACac -5'
29541 3' -54.3 NC_006151.1 + 121088 0.68 0.867099
Target:  5'- gGGCggCGgcgCCGGGCuGCACGACCa--- -3'
miRNA:   3'- -UCGuaGUa--GGUCCG-CGUGUUGGacac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.