Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29541 | 3' | -54.3 | NC_006151.1 | + | 133803 | 0.76 | 0.408502 |
Target: 5'- uGCAgCAUCCGGGUGCACGuCCggGUGg -3' miRNA: 3'- uCGUaGUAGGUCCGCGUGUuGGa-CAC- -5' |
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29541 | 3' | -54.3 | NC_006151.1 | + | 106680 | 0.76 | 0.426535 |
Target: 5'- cGGCGcUCGgcgcgCCGGGCGCcgGCGACCUGUa -3' miRNA: 3'- -UCGU-AGUa----GGUCCGCG--UGUUGGACAc -5' |
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29541 | 3' | -54.3 | NC_006151.1 | + | 22318 | 0.73 | 0.595428 |
Target: 5'- gAGCGUCGUCCGGGCGaccaGCGccGCCa--- -3' miRNA: 3'- -UCGUAGUAGGUCCGCg---UGU--UGGacac -5' |
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29541 | 3' | -54.3 | NC_006151.1 | + | 59104 | 0.71 | 0.700336 |
Target: 5'- cGGCGUucCAUCagcaGGGCGUACAGCUgccgGUGg -3' miRNA: 3'- -UCGUA--GUAGg---UCCGCGUGUUGGa---CAC- -5' |
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29541 | 3' | -54.3 | NC_006151.1 | + | 70903 | 0.71 | 0.710648 |
Target: 5'- uGCGUCGUgcgcugCCuGGCGCGCGugCUGg- -3' miRNA: 3'- uCGUAGUA------GGuCCGCGUGUugGACac -5' |
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29541 | 3' | -54.3 | NC_006151.1 | + | 100276 | 0.71 | 0.72089 |
Target: 5'- cGCuUCGUCUuccgcGGGCGCACGGCCUc-- -3' miRNA: 3'- uCGuAGUAGG-----UCCGCGUGUUGGAcac -5' |
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29541 | 3' | -54.3 | NC_006151.1 | + | 101314 | 0.71 | 0.72089 |
Target: 5'- uGCGUCuucUCgCGGGUGCACGGCgaGUGc -3' miRNA: 3'- uCGUAGu--AG-GUCCGCGUGUUGgaCAC- -5' |
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29541 | 3' | -54.3 | NC_006151.1 | + | 102610 | 0.7 | 0.741122 |
Target: 5'- gGGCGcUCGagCGGGCGCGCGACgUGa- -3' miRNA: 3'- -UCGU-AGUagGUCCGCGUGUUGgACac -5' |
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29541 | 3' | -54.3 | NC_006151.1 | + | 3232 | 0.69 | 0.78976 |
Target: 5'- uGCcgCAUCCAGGCGgCGCGGCg---- -3' miRNA: 3'- uCGuaGUAGGUCCGC-GUGUUGgacac -5' |
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29541 | 3' | -54.3 | NC_006151.1 | + | 62084 | 0.69 | 0.78976 |
Target: 5'- -aCGUCGUCCucGGCGCGguCGGCCUGg- -3' miRNA: 3'- ucGUAGUAGGu-CCGCGU--GUUGGACac -5' |
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29541 | 3' | -54.3 | NC_006151.1 | + | 55225 | 0.69 | 0.799075 |
Target: 5'- gGGCAcCAcggcgCC-GGCGCGCAGCCgGUGc -3' miRNA: 3'- -UCGUaGUa----GGuCCGCGUGUUGGaCAC- -5' |
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29541 | 3' | -54.3 | NC_006151.1 | + | 133227 | 0.69 | 0.799075 |
Target: 5'- uGCGUCGcgccgcgCCAGGgcacguuggccuCGCACGGCCUGUc -3' miRNA: 3'- uCGUAGUa------GGUCC------------GCGUGUUGGACAc -5' |
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29541 | 3' | -54.3 | NC_006151.1 | + | 112240 | 0.69 | 0.826024 |
Target: 5'- cGCcgCcgCCAGGCGCu--GCgUGUGg -3' miRNA: 3'- uCGuaGuaGGUCCGCGuguUGgACAC- -5' |
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29541 | 3' | -54.3 | NC_006151.1 | + | 62370 | 0.69 | 0.826024 |
Target: 5'- cGGCGUCGUCauCGGGaCGCGCGccguCCUGg- -3' miRNA: 3'- -UCGUAGUAG--GUCC-GCGUGUu---GGACac -5' |
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29541 | 3' | -54.3 | NC_006151.1 | + | 98050 | 0.68 | 0.834645 |
Target: 5'- gAGCAccacCAgccCCGGGCGCuCGGCCUGg- -3' miRNA: 3'- -UCGUa---GUa--GGUCCGCGuGUUGGACac -5' |
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29541 | 3' | -54.3 | NC_006151.1 | + | 78051 | 0.68 | 0.84307 |
Target: 5'- cGGCG-CAUCUGGGCGaCGCGcggcgggaGCCUGUc -3' miRNA: 3'- -UCGUaGUAGGUCCGC-GUGU--------UGGACAc -5' |
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29541 | 3' | -54.3 | NC_006151.1 | + | 103880 | 0.68 | 0.84307 |
Target: 5'- cGC-UgGUCgAGGCGCGCcACCUGg- -3' miRNA: 3'- uCGuAgUAGgUCCGCGUGuUGGACac -5' |
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29541 | 3' | -54.3 | NC_006151.1 | + | 129412 | 0.68 | 0.849665 |
Target: 5'- cGGCGUauucggcgaggucgaCGUCCggccccaagugggcgGGGCGCACGGCC-GUGg -3' miRNA: 3'- -UCGUA---------------GUAGG---------------UCCGCGUGUUGGaCAC- -5' |
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29541 | 3' | -54.3 | NC_006151.1 | + | 114904 | 0.68 | 0.851293 |
Target: 5'- cGCGagGcCCGGGCGCACGGCCc--- -3' miRNA: 3'- uCGUagUaGGUCCGCGUGUUGGacac -5' |
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29541 | 3' | -54.3 | NC_006151.1 | + | 97793 | 0.68 | 0.851293 |
Target: 5'- cGCGaagCGcUCAGGCGCGCGGCC-GUGc -3' miRNA: 3'- uCGUa--GUaGGUCCGCGUGUUGGaCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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