miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29541 3' -54.3 NC_006151.1 + 128706 0.68 0.859305
Target:  5'- cAGCAucUCGUgCAGGCGCACGcucgUCUGg- -3'
miRNA:   3'- -UCGU--AGUAgGUCCGCGUGUu---GGACac -5'
29541 3' -54.3 NC_006151.1 + 114904 0.68 0.851293
Target:  5'- cGCGagGcCCGGGCGCACGGCCc--- -3'
miRNA:   3'- uCGUagUaGGUCCGCGUGUUGGacac -5'
29541 3' -54.3 NC_006151.1 + 97793 0.68 0.851293
Target:  5'- cGCGaagCGcUCAGGCGCGCGGCC-GUGc -3'
miRNA:   3'- uCGUa--GUaGGUCCGCGUGUUGGaCAC- -5'
29541 3' -54.3 NC_006151.1 + 129412 0.68 0.849665
Target:  5'- cGGCGUauucggcgaggucgaCGUCCggccccaagugggcgGGGCGCACGGCC-GUGg -3'
miRNA:   3'- -UCGUA---------------GUAGG---------------UCCGCGUGUUGGaCAC- -5'
29541 3' -54.3 NC_006151.1 + 103880 0.68 0.84307
Target:  5'- cGC-UgGUCgAGGCGCGCcACCUGg- -3'
miRNA:   3'- uCGuAgUAGgUCCGCGUGuUGGACac -5'
29541 3' -54.3 NC_006151.1 + 78051 0.68 0.84307
Target:  5'- cGGCG-CAUCUGGGCGaCGCGcggcgggaGCCUGUc -3'
miRNA:   3'- -UCGUaGUAGGUCCGC-GUGU--------UGGACAc -5'
29541 3' -54.3 NC_006151.1 + 98050 0.68 0.834645
Target:  5'- gAGCAccacCAgccCCGGGCGCuCGGCCUGg- -3'
miRNA:   3'- -UCGUa---GUa--GGUCCGCGuGUUGGACac -5'
29541 3' -54.3 NC_006151.1 + 62370 0.69 0.826024
Target:  5'- cGGCGUCGUCauCGGGaCGCGCGccguCCUGg- -3'
miRNA:   3'- -UCGUAGUAG--GUCC-GCGUGUu---GGACac -5'
29541 3' -54.3 NC_006151.1 + 112240 0.69 0.826024
Target:  5'- cGCcgCcgCCAGGCGCu--GCgUGUGg -3'
miRNA:   3'- uCGuaGuaGGUCCGCGuguUGgACAC- -5'
29541 3' -54.3 NC_006151.1 + 55225 0.69 0.799075
Target:  5'- gGGCAcCAcggcgCC-GGCGCGCAGCCgGUGc -3'
miRNA:   3'- -UCGUaGUa----GGuCCGCGUGUUGGaCAC- -5'
29541 3' -54.3 NC_006151.1 + 133227 0.69 0.799075
Target:  5'- uGCGUCGcgccgcgCCAGGgcacguuggccuCGCACGGCCUGUc -3'
miRNA:   3'- uCGUAGUa------GGUCC------------GCGUGUUGGACAc -5'
29541 3' -54.3 NC_006151.1 + 3232 0.69 0.78976
Target:  5'- uGCcgCAUCCAGGCGgCGCGGCg---- -3'
miRNA:   3'- uCGuaGUAGGUCCGC-GUGUUGgacac -5'
29541 3' -54.3 NC_006151.1 + 62084 0.69 0.78976
Target:  5'- -aCGUCGUCCucGGCGCGguCGGCCUGg- -3'
miRNA:   3'- ucGUAGUAGGu-CCGCGU--GUUGGACac -5'
29541 3' -54.3 NC_006151.1 + 102610 0.7 0.741122
Target:  5'- gGGCGcUCGagCGGGCGCGCGACgUGa- -3'
miRNA:   3'- -UCGU-AGUagGUCCGCGUGUUGgACac -5'
29541 3' -54.3 NC_006151.1 + 101314 0.71 0.72089
Target:  5'- uGCGUCuucUCgCGGGUGCACGGCgaGUGc -3'
miRNA:   3'- uCGUAGu--AG-GUCCGCGUGUUGgaCAC- -5'
29541 3' -54.3 NC_006151.1 + 100276 0.71 0.72089
Target:  5'- cGCuUCGUCUuccgcGGGCGCACGGCCUc-- -3'
miRNA:   3'- uCGuAGUAGG-----UCCGCGUGUUGGAcac -5'
29541 3' -54.3 NC_006151.1 + 70903 0.71 0.710648
Target:  5'- uGCGUCGUgcgcugCCuGGCGCGCGugCUGg- -3'
miRNA:   3'- uCGUAGUA------GGuCCGCGUGUugGACac -5'
29541 3' -54.3 NC_006151.1 + 59104 0.71 0.700336
Target:  5'- cGGCGUucCAUCagcaGGGCGUACAGCUgccgGUGg -3'
miRNA:   3'- -UCGUA--GUAGg---UCCGCGUGUUGGa---CAC- -5'
29541 3' -54.3 NC_006151.1 + 22318 0.73 0.595428
Target:  5'- gAGCGUCGUCCGGGCGaccaGCGccGCCa--- -3'
miRNA:   3'- -UCGUAGUAGGUCCGCg---UGU--UGGacac -5'
29541 3' -54.3 NC_006151.1 + 106680 0.76 0.426535
Target:  5'- cGGCGcUCGgcgcgCCGGGCGCcgGCGACCUGUa -3'
miRNA:   3'- -UCGU-AGUa----GGUCCGCG--UGUUGGACAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.