miRNA display CGI


Results 1 - 20 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29541 5' -67.6 NC_006151.1 + 101446 0.66 0.407845
Target:  5'- gUCGUGgUCG-GCGCC--GUGGGCCUg -3'
miRNA:   3'- gAGCGCgAGCgCGCGGgcCGCCCGGA- -5'
29541 5' -67.6 NC_006151.1 + 30906 0.66 0.407845
Target:  5'- -gCGCGCgguaGCGCCC-GCGGGCg- -3'
miRNA:   3'- gaGCGCGagcgCGCGGGcCGCCCGga -5'
29541 5' -67.6 NC_006151.1 + 70779 0.66 0.407845
Target:  5'- -aCGCGC--GCGCcuccgGCaCCGGCGuGGCCg -3'
miRNA:   3'- gaGCGCGagCGCG-----CG-GGCCGC-CCGGa -5'
29541 5' -67.6 NC_006151.1 + 71043 0.66 0.407845
Target:  5'- -gCGCGC-CGCGCGCgucgucgccgacCCGGcCGuGGUCUu -3'
miRNA:   3'- gaGCGCGaGCGCGCG------------GGCC-GC-CCGGA- -5'
29541 5' -67.6 NC_006151.1 + 76702 0.66 0.407845
Target:  5'- gUgGCGCggGCGCGCCgCGGCc-GCCUu -3'
miRNA:   3'- gAgCGCGagCGCGCGG-GCCGccCGGA- -5'
29541 5' -67.6 NC_006151.1 + 14824 0.66 0.407845
Target:  5'- -cCGCGUcCGcCGCGCCCauGGacCGGGUCUg -3'
miRNA:   3'- gaGCGCGaGC-GCGCGGG--CC--GCCCGGA- -5'
29541 5' -67.6 NC_006151.1 + 83350 0.66 0.407845
Target:  5'- -aCGUGCUCcccgGCGCGCgC-GCGGGCg- -3'
miRNA:   3'- gaGCGCGAG----CGCGCGgGcCGCCCGga -5'
29541 5' -67.6 NC_006151.1 + 135365 0.66 0.407042
Target:  5'- -cCGCGCguuggccgCGUGCGCCgcgaccaCGGCGuccaGGCCg -3'
miRNA:   3'- gaGCGCGa-------GCGCGCGG-------GCCGC----CCGGa -5'
29541 5' -67.6 NC_006151.1 + 35197 0.66 0.406241
Target:  5'- -gCGCGCgggagacgccucCGCGCGCCCauuggcccgGGCGaGCCg -3'
miRNA:   3'- gaGCGCGa-----------GCGCGCGGG---------CCGCcCGGa -5'
29541 5' -67.6 NC_006151.1 + 2165 0.66 0.40544
Target:  5'- -cCGUcCUCGCcggggccggccccgGCGCCCGaggcccccGCGGGCCg -3'
miRNA:   3'- gaGCGcGAGCG--------------CGCGGGC--------CGCCCGGa -5'
29541 5' -67.6 NC_006151.1 + 136997 0.66 0.403045
Target:  5'- -gCGgGCgCGCGCGCaCGGCGcugggcgcccugcucGGCCUg -3'
miRNA:   3'- gaGCgCGaGCGCGCGgGCCGC---------------CCGGA- -5'
29541 5' -67.6 NC_006151.1 + 2397 0.66 0.399865
Target:  5'- cCUCgGgGC-CGCGgaGCUCGGCGaGGCCc -3'
miRNA:   3'- -GAG-CgCGaGCGCg-CGGGCCGC-CCGGa -5'
29541 5' -67.6 NC_006151.1 + 55057 0.66 0.399865
Target:  5'- ---aUGCUCG-GCGaggaCCCGGCGGGCUc -3'
miRNA:   3'- gagcGCGAGCgCGC----GGGCCGCCCGGa -5'
29541 5' -67.6 NC_006151.1 + 75616 0.66 0.399865
Target:  5'- -gCGCGCaCGCGCGCCgaGcccaCGGGCUUg -3'
miRNA:   3'- gaGCGCGaGCGCGCGGg-Cc---GCCCGGA- -5'
29541 5' -67.6 NC_006151.1 + 88377 0.66 0.399865
Target:  5'- gCUCgGCGCgaGCGCGuCCgCGGCGuccgcGGCCg -3'
miRNA:   3'- -GAG-CGCGagCGCGC-GG-GCCGC-----CCGGa -5'
29541 5' -67.6 NC_006151.1 + 91543 0.66 0.399865
Target:  5'- -gUGCGCgaggUGCGCGgCCaGCGGGgCg -3'
miRNA:   3'- gaGCGCGa---GCGCGCgGGcCGCCCgGa -5'
29541 5' -67.6 NC_006151.1 + 105559 0.66 0.399865
Target:  5'- -aCGaCGCccUGCGCGCgCUGGCGGccGCCUu -3'
miRNA:   3'- gaGC-GCGa-GCGCGCG-GGCCGCC--CGGA- -5'
29541 5' -67.6 NC_006151.1 + 125480 0.66 0.399865
Target:  5'- -cCGCGCUCggccaGCGCGUCuCGGCGcGCa- -3'
miRNA:   3'- gaGCGCGAG-----CGCGCGG-GCCGCcCGga -5'
29541 5' -67.6 NC_006151.1 + 139231 0.66 0.399865
Target:  5'- -cCGCacaUCGCGCGCgucuCCGGCGcgacGGCCa -3'
miRNA:   3'- gaGCGcg-AGCGCGCG----GGCCGC----CCGGa -5'
29541 5' -67.6 NC_006151.1 + 139656 0.66 0.399865
Target:  5'- gUCGCgGCgggCGCGcCGCCCGaCaGGCCc -3'
miRNA:   3'- gAGCG-CGa--GCGC-GCGGGCcGcCCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.