miRNA display CGI


Results 1 - 20 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29541 5' -67.6 NC_006151.1 + 33907 0.81 0.033164
Target:  5'- cCUCGCGcCUC-CGCGUCCGGCGGGCg- -3'
miRNA:   3'- -GAGCGC-GAGcGCGCGGGCCGCCCGga -5'
29541 5' -67.6 NC_006151.1 + 94039 0.79 0.049747
Target:  5'- --aGCGCUCGCGCGCCgCGGCGucGCCg -3'
miRNA:   3'- gagCGCGAGCGCGCGG-GCCGCc-CGGa -5'
29541 5' -67.6 NC_006151.1 + 137258 0.77 0.063961
Target:  5'- uUCGC-CUCGCGCGCCCGgugcccGCGGGCa- -3'
miRNA:   3'- gAGCGcGAGCGCGCGGGC------CGCCCGga -5'
29541 5' -67.6 NC_006151.1 + 86434 0.77 0.065582
Target:  5'- cCUCGCGg-CGCcugGCGCCCGGCGaGGCCc -3'
miRNA:   3'- -GAGCGCgaGCG---CGCGGGCCGC-CCGGa -5'
29541 5' -67.6 NC_006151.1 + 57116 0.77 0.070685
Target:  5'- -gCGCGC-CGcCGCGCCCGGCGGucGCCc -3'
miRNA:   3'- gaGCGCGaGC-GCGCGGGCCGCC--CGGa -5'
29541 5' -67.6 NC_006151.1 + 130332 0.76 0.076169
Target:  5'- gCUCGgggaGCUCGCGCGCCgCGGCGucgugguugacGGCCg -3'
miRNA:   3'- -GAGCg---CGAGCGCGCGG-GCCGC-----------CCGGa -5'
29541 5' -67.6 NC_006151.1 + 132621 0.76 0.084117
Target:  5'- gUCGaCGCUCGCguccgccgucgGCGCCCGGaccuGGGCCg -3'
miRNA:   3'- gAGC-GCGAGCG-----------CGCGGGCCg---CCCGGa -5'
29541 5' -67.6 NC_006151.1 + 50000 0.76 0.088382
Target:  5'- -cCGCGUUUGCGCGCCgCGcGCGcGGCCc -3'
miRNA:   3'- gaGCGCGAGCGCGCGG-GC-CGC-CCGGa -5'
29541 5' -67.6 NC_006151.1 + 127431 0.75 0.09059
Target:  5'- cCUCgGCGCUCGUGCGCgagagCCGGCGGcGCa- -3'
miRNA:   3'- -GAG-CGCGAGCGCGCG-----GGCCGCC-CGga -5'
29541 5' -67.6 NC_006151.1 + 20793 0.75 0.092852
Target:  5'- gCUCGCGCUUGCGCagacaGCCgCGGaaGGCCUc -3'
miRNA:   3'- -GAGCGCGAGCGCG-----CGG-GCCgcCCGGA- -5'
29541 5' -67.6 NC_006151.1 + 135468 0.75 0.095166
Target:  5'- -gUGCGCgccaGCGUGUCCGcGCGGGCCa -3'
miRNA:   3'- gaGCGCGag--CGCGCGGGC-CGCCCGGa -5'
29541 5' -67.6 NC_006151.1 + 85355 0.75 0.097535
Target:  5'- -cCGCGCUgGCGCGCCUGcGCGuGGUCc -3'
miRNA:   3'- gaGCGCGAgCGCGCGGGC-CGC-CCGGa -5'
29541 5' -67.6 NC_006151.1 + 104797 0.75 0.102442
Target:  5'- -gCGCGCUCGUGCGCCgcgaccuggCGGCGGcGCg- -3'
miRNA:   3'- gaGCGCGAGCGCGCGG---------GCCGCC-CGga -5'
29541 5' -67.6 NC_006151.1 + 91024 0.75 0.104981
Target:  5'- gUCGCGgUCGCGCGCCgGGaaGGUCa -3'
miRNA:   3'- gAGCGCgAGCGCGCGGgCCgcCCGGa -5'
29541 5' -67.6 NC_006151.1 + 24878 0.75 0.104981
Target:  5'- -cCGC-CUCGCcCGgCCGGCGGGCCa -3'
miRNA:   3'- gaGCGcGAGCGcGCgGGCCGCCCGGa -5'
29541 5' -67.6 NC_006151.1 + 106368 0.74 0.10758
Target:  5'- -aCGCGggCGCGCGCCCGccGCGGcGCCc -3'
miRNA:   3'- gaGCGCgaGCGCGCGGGC--CGCC-CGGa -5'
29541 5' -67.6 NC_006151.1 + 136808 0.74 0.110239
Target:  5'- -cCGCGCUCGCGgccgaCGCgCCGcGCGGGCUc -3'
miRNA:   3'- gaGCGCGAGCGC-----GCG-GGC-CGCCCGGa -5'
29541 5' -67.6 NC_006151.1 + 82616 0.74 0.11296
Target:  5'- -cCGCGCgCGgGCGCCgCGGUGGGCg- -3'
miRNA:   3'- gaGCGCGaGCgCGCGG-GCCGCCCGga -5'
29541 5' -67.6 NC_006151.1 + 84592 0.74 0.115743
Target:  5'- cCUCGCGCUggcgcacgcgaaCGCGCGCCgCcGCGcGGCCg -3'
miRNA:   3'- -GAGCGCGA------------GCGCGCGG-GcCGC-CCGGa -5'
29541 5' -67.6 NC_006151.1 + 73111 0.74 0.115743
Target:  5'- cCUCGCcgGCg-GCGCGCCCGcGCGGGUUg -3'
miRNA:   3'- -GAGCG--CGagCGCGCGGGC-CGCCCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.