miRNA display CGI


Results 41 - 60 of 456 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 3' -56.1 NC_006151.1 + 132155 0.66 0.899193
Target:  5'- uGACgGCGcGCAGCuGCGCG-GCCgGCa -3'
miRNA:   3'- -CUG-CGCaUGUCGuUGUGCgCGGaCGg -5'
29543 3' -56.1 NC_006151.1 + 122783 0.66 0.899193
Target:  5'- -uCGUGgGCGGCuGCGCG-GCCUcGCCc -3'
miRNA:   3'- cuGCGCaUGUCGuUGUGCgCGGA-CGG- -5'
29543 3' -56.1 NC_006151.1 + 139776 0.66 0.899193
Target:  5'- cGACGCGccccccgAUcgucugucggagAGC-GCGCGCGCC-GCCg -3'
miRNA:   3'- -CUGCGCa------UG------------UCGuUGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 129981 0.66 0.899839
Target:  5'- cGGCGCGgaaggccucgucguCGGggauguccgagaCGGCGCGCGCCacgGCCg -3'
miRNA:   3'- -CUGCGCau------------GUC------------GUUGUGCGCGGa--CGG- -5'
29543 3' -56.1 NC_006151.1 + 130731 0.66 0.899839
Target:  5'- cGCGCG-GCcGCGGCGCaGCGCCacccacgacggcaugGCCa -3'
miRNA:   3'- cUGCGCaUGuCGUUGUG-CGCGGa--------------CGG- -5'
29543 3' -56.1 NC_006151.1 + 65362 0.66 0.899193
Target:  5'- aGACGCGccccaggGCGuGCAcCACGUGCCccgggcgcGCCg -3'
miRNA:   3'- -CUGCGCa------UGU-CGUuGUGCGCGGa-------CGG- -5'
29543 3' -56.1 NC_006151.1 + 50667 0.66 0.899193
Target:  5'- -uCGUGcGCGGCcGCAccccCGCGCC-GCCg -3'
miRNA:   3'- cuGCGCaUGUCGuUGU----GCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 82000 0.66 0.899193
Target:  5'- --gGCGgccaggGCGGCcGCGUGCGCC-GCCg -3'
miRNA:   3'- cugCGCa-----UGUCGuUGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 110911 0.66 0.891934
Target:  5'- uGCGCGUGCcGCAGguuCACGaggGCCagggaggUGCCg -3'
miRNA:   3'- cUGCGCAUGuCGUU---GUGCg--CGG-------ACGG- -5'
29543 3' -56.1 NC_006151.1 + 47386 0.66 0.892606
Target:  5'- aGugGCacucagACAGCAcuuuggcCugGCGCCcgGCCa -3'
miRNA:   3'- -CugCGca----UGUCGUu------GugCGCGGa-CGG- -5'
29543 3' -56.1 NC_006151.1 + 111252 0.66 0.892606
Target:  5'- --gGUGUGCAGCAGCGaggccgggaacCGCGCggGCg -3'
miRNA:   3'- cugCGCAUGUCGUUGU-----------GCGCGgaCGg -5'
29543 3' -56.1 NC_006151.1 + 49833 0.66 0.892606
Target:  5'- gGACGaCG-ACGGCGGCgGCGgGCCcGCg -3'
miRNA:   3'- -CUGC-GCaUGUCGUUG-UGCgCGGaCGg -5'
29543 3' -56.1 NC_006151.1 + 75435 0.66 0.892606
Target:  5'- gGGCGCGaagcugcCGGCGugGCGCGCgUagcggucggcgGCCg -3'
miRNA:   3'- -CUGCGCau-----GUCGUugUGCGCGgA-----------CGG- -5'
29543 3' -56.1 NC_006151.1 + 82920 0.66 0.892606
Target:  5'- cGACGUGaa-GGCGcACACGCa-CUGCCg -3'
miRNA:   3'- -CUGCGCaugUCGU-UGUGCGcgGACGG- -5'
29543 3' -56.1 NC_006151.1 + 93579 0.66 0.892606
Target:  5'- gGGCGCGccaaAgAGCgGGCuCGCGCCgaugGCCu -3'
miRNA:   3'- -CUGCGCa---UgUCG-UUGuGCGCGGa---CGG- -5'
29543 3' -56.1 NC_006151.1 + 96069 0.66 0.892606
Target:  5'- --gGCGaGCgAGCcGCGCGCGCg-GCCg -3'
miRNA:   3'- cugCGCaUG-UCGuUGUGCGCGgaCGG- -5'
29543 3' -56.1 NC_006151.1 + 76342 0.66 0.892606
Target:  5'- -cCGgGUGCGGCccguCGCGCGCgaucaucggCUGCUg -3'
miRNA:   3'- cuGCgCAUGUCGuu--GUGCGCG---------GACGG- -5'
29543 3' -56.1 NC_006151.1 + 87165 0.66 0.892606
Target:  5'- cGACGcCGUACuacGCGccCGCgGCGCC-GCCg -3'
miRNA:   3'- -CUGC-GCAUGu--CGUu-GUG-CGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 90445 0.66 0.898545
Target:  5'- aGCGUGaUGCAGCGgguggacucgagcGCGCaGCGCCaGCa -3'
miRNA:   3'- cUGCGC-AUGUCGU-------------UGUG-CGCGGaCGg -5'
29543 3' -56.1 NC_006151.1 + 60033 0.66 0.899193
Target:  5'- --aGCGUGCAGCGcucgaACAgGUGCUUGa- -3'
miRNA:   3'- cugCGCAUGUCGU-----UGUgCGCGGACgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.