Results 81 - 100 of 456 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29543 | 3' | -56.1 | NC_006151.1 | + | 47386 | 0.66 | 0.892606 |
Target: 5'- aGugGCacucagACAGCAcuuuggcCugGCGCCcgGCCa -3' miRNA: 3'- -CugCGca----UGUCGUu------GugCGCGGa-CGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 110911 | 0.66 | 0.891934 |
Target: 5'- uGCGCGUGCcGCAGguuCACGaggGCCagggaggUGCCg -3' miRNA: 3'- cUGCGCAUGuCGUU---GUGCg--CGG-------ACGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 55880 | 0.66 | 0.885787 |
Target: 5'- cGGCGCuGUcGCGGCgGACGUGCGCCggGCg -3' miRNA: 3'- -CUGCG-CA-UGUCG-UUGUGCGCGGa-CGg -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 115359 | 0.67 | 0.859399 |
Target: 5'- uGACGCcgauGUACuucuucuucgugaugAGCAGCAgGCGCCggaagGUCu -3' miRNA: 3'- -CUGCG----CAUG---------------UCGUUGUgCGCGGa----CGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 105751 | 0.67 | 0.856296 |
Target: 5'- aGCGCGU--GGCG--GCGCGCCUGg- -3' miRNA: 3'- cUGCGCAugUCGUugUGCGCGGACgg -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 105590 | 0.67 | 0.856296 |
Target: 5'- cGACGCGcGC-GCGGa--GCGgCUGCCg -3' miRNA: 3'- -CUGCGCaUGuCGUUgugCGCgGACGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 54516 | 0.67 | 0.856296 |
Target: 5'- -uUGUGcGCGGCAuCGCG-GCCUGCUu -3' miRNA: 3'- cuGCGCaUGUCGUuGUGCgCGGACGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 40134 | 0.67 | 0.856296 |
Target: 5'- cGGCGUccGCGGCGGCgACG-GCCgGCCc -3' miRNA: 3'- -CUGCGcaUGUCGUUG-UGCgCGGaCGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 39001 | 0.67 | 0.856296 |
Target: 5'- cGCGCGccGCGGCGccccgcuccgccGC-CGCGCC-GCCu -3' miRNA: 3'- cUGCGCa-UGUCGU------------UGuGCGCGGaCGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 30610 | 0.67 | 0.856296 |
Target: 5'- aACGCGgGCGGuCGGCGUGCGCgCUGUg -3' miRNA: 3'- cUGCGCaUGUC-GUUGUGCGCG-GACGg -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 22843 | 0.67 | 0.861705 |
Target: 5'- aGCGCGcUGCccaggaagcccaggAGCAGgGCGgGgCUGCCg -3' miRNA: 3'- cUGCGC-AUG--------------UCGUUgUGCgCgGACGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 54624 | 0.67 | 0.862469 |
Target: 5'- gGGCGCGccccggggggaaGCGGCGGCGCGaGCgCUGCg -3' miRNA: 3'- -CUGCGCa-----------UGUCGUUGUGCgCG-GACGg -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 4276 | 0.67 | 0.863991 |
Target: 5'- gGACGCc-GCGGCAggccaggacGCAgGCGUCcGCCa -3' miRNA: 3'- -CUGCGcaUGUCGU---------UGUgCGCGGaCGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 69979 | 0.67 | 0.863991 |
Target: 5'- gGGCGC-UGCAGCGGCGgcaGCGUCaGCa -3' miRNA: 3'- -CUGCGcAUGUCGUUGUg--CGCGGaCGg -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 74133 | 0.67 | 0.863991 |
Target: 5'- uGCGCG-GguGCAGCGgGUGCCggggGUCg -3' miRNA: 3'- cUGCGCaUguCGUUGUgCGCGGa---CGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 105109 | 0.67 | 0.863991 |
Target: 5'- aGGCGCGgcucaucaucgACAcGCAcccgcugacgACGCGCGUCgacgGCCg -3' miRNA: 3'- -CUGCGCa----------UGU-CGU----------UGUGCGCGGa---CGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 7060 | 0.67 | 0.863991 |
Target: 5'- cGCGCGga-GGCGucuccCGCGCGCCucugauuugcaUGCCc -3' miRNA: 3'- cUGCGCaugUCGUu----GUGCGCGG-----------ACGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 76176 | 0.67 | 0.863991 |
Target: 5'- cGCGCGaGCuGCuggauGGCGCGCaGCCgcaugGCCg -3' miRNA: 3'- cUGCGCaUGuCG-----UUGUGCG-CGGa----CGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 94028 | 0.67 | 0.863991 |
Target: 5'- cGCGCGcACguAGCGcuCGCGCGCCgcggcgucGCCg -3' miRNA: 3'- cUGCGCaUG--UCGUu-GUGCGCGGa-------CGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 22288 | 0.67 | 0.856296 |
Target: 5'- cGGCGCGggcACGGCGuccACGucCGCGCCgagcGUCg -3' miRNA: 3'- -CUGCGCa--UGUCGU---UGU--GCGCGGa---CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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