miRNA display CGI


Results 121 - 140 of 456 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 3' -56.1 NC_006151.1 + 74133 0.67 0.863991
Target:  5'- uGCGCG-GguGCAGCGgGUGCCggggGUCg -3'
miRNA:   3'- cUGCGCaUguCGUUGUgCGCGGa---CGG- -5'
29543 3' -56.1 NC_006151.1 + 105109 0.67 0.863991
Target:  5'- aGGCGCGgcucaucaucgACAcGCAcccgcugacgACGCGCGUCgacgGCCg -3'
miRNA:   3'- -CUGCGCa----------UGU-CGU----------UGUGCGCGGa---CGG- -5'
29543 3' -56.1 NC_006151.1 + 7060 0.67 0.863991
Target:  5'- cGCGCGga-GGCGucuccCGCGCGCCucugauuugcaUGCCc -3'
miRNA:   3'- cUGCGCaugUCGUu----GUGCGCGG-----------ACGG- -5'
29543 3' -56.1 NC_006151.1 + 76176 0.67 0.863991
Target:  5'- cGCGCGaGCuGCuggauGGCGCGCaGCCgcaugGCCg -3'
miRNA:   3'- cUGCGCaUGuCG-----UUGUGCG-CGGa----CGG- -5'
29543 3' -56.1 NC_006151.1 + 94028 0.67 0.863991
Target:  5'- cGCGCGcACguAGCGcuCGCGCGCCgcggcgucGCCg -3'
miRNA:   3'- cUGCGCaUG--UCGUu-GUGCGCGGa-------CGG- -5'
29543 3' -56.1 NC_006151.1 + 54516 0.67 0.856296
Target:  5'- -uUGUGcGCGGCAuCGCG-GCCUGCUu -3'
miRNA:   3'- cuGCGCaUGUCGUuGUGCgCGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 40134 0.67 0.856296
Target:  5'- cGGCGUccGCGGCGGCgACG-GCCgGCCc -3'
miRNA:   3'- -CUGCGcaUGUCGUUG-UGCgCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 39001 0.67 0.856296
Target:  5'- cGCGCGccGCGGCGccccgcuccgccGC-CGCGCC-GCCu -3'
miRNA:   3'- cUGCGCa-UGUCGU------------UGuGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 85112 0.67 0.848396
Target:  5'- cGGCGCucgAgAGCGccGCGCuGUGCCUGCa -3'
miRNA:   3'- -CUGCGca-UgUCGU--UGUG-CGCGGACGg -5'
29543 3' -56.1 NC_006151.1 + 45180 0.67 0.853947
Target:  5'- gGugGCGUgcccgccaccacggACGGCGACGgggUGCGCCgcGCUc -3'
miRNA:   3'- -CugCGCA--------------UGUCGUUGU---GCGCGGa-CGG- -5'
29543 3' -56.1 NC_006151.1 + 132804 0.67 0.855515
Target:  5'- aGGCGCugGUACAGCGcguccggGCugGCcGCCcGCg -3'
miRNA:   3'- -CUGCG--CAUGUCGU-------UGugCG-CGGaCGg -5'
29543 3' -56.1 NC_006151.1 + 40416 0.67 0.855515
Target:  5'- cGGCGgccucgguccccuCGgccCGGCGGCGCuugccuccccgGCGCCUGCCu -3'
miRNA:   3'- -CUGC-------------GCau-GUCGUUGUG-----------CGCGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 76751 0.67 0.856296
Target:  5'- uACGCGcGCGGCAGCaggaaggcgaGCGCGUC-GCa -3'
miRNA:   3'- cUGCGCaUGUCGUUG----------UGCGCGGaCGg -5'
29543 3' -56.1 NC_006151.1 + 55821 0.67 0.856296
Target:  5'- gGACcUGUGCGGCGugguguuuaagaAgACGCGCCUcgagGCCu -3'
miRNA:   3'- -CUGcGCAUGUCGU------------UgUGCGCGGA----CGG- -5'
29543 3' -56.1 NC_006151.1 + 69644 0.67 0.856296
Target:  5'- cGCGCGUGCGGCGccGC-CGgGUCgucgaaGCCc -3'
miRNA:   3'- cUGCGCAUGUCGU--UGuGCgCGGa-----CGG- -5'
29543 3' -56.1 NC_006151.1 + 102394 0.67 0.856296
Target:  5'- uGGCGCuggucGCGGCGCGCGUCgcgcgGCCc -3'
miRNA:   3'- -CUGCGcauguCGUUGUGCGCGGa----CGG- -5'
29543 3' -56.1 NC_006151.1 + 119636 0.67 0.856296
Target:  5'- aGCGCcUACAGCGACugcgACGUGCUcgGCa -3'
miRNA:   3'- cUGCGcAUGUCGUUG----UGCGCGGa-CGg -5'
29543 3' -56.1 NC_006151.1 + 127240 0.67 0.856296
Target:  5'- cACGCGccagcucuUGCGGCGcgACGCGCGgUgGCCg -3'
miRNA:   3'- cUGCGC--------AUGUCGU--UGUGCGCgGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 22288 0.67 0.856296
Target:  5'- cGGCGCGggcACGGCGuccACGucCGCGCCgagcGUCg -3'
miRNA:   3'- -CUGCGCa--UGUCGU---UGU--GCGCGGa---CGG- -5'
29543 3' -56.1 NC_006151.1 + 30610 0.67 0.856296
Target:  5'- aACGCGgGCGGuCGGCGUGCGCgCUGUg -3'
miRNA:   3'- cUGCGCaUGUC-GUUGUGCGCG-GACGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.