miRNA display CGI


Results 61 - 80 of 456 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 3' -56.1 NC_006151.1 + 139308 0.73 0.517491
Target:  5'- cGGCGCGUGCuGCucGAC-CGUGCUcGCCg -3'
miRNA:   3'- -CUGCGCAUGuCG--UUGuGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 137004 0.73 0.537307
Target:  5'- cGCGCGcACGGCGcuGgGCGCccugcucgGCCUGCCg -3'
miRNA:   3'- cUGCGCaUGUCGU--UgUGCG--------CGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 74987 0.73 0.507693
Target:  5'- uGAUGC--GCGGCAucGCGCGCaCCUGCCc -3'
miRNA:   3'- -CUGCGcaUGUCGU--UGUGCGcGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 124063 0.73 0.527365
Target:  5'- gGACGCGcggACGGCcgUGCGCGCg-GCCg -3'
miRNA:   3'- -CUGCGCa--UGUCGuuGUGCGCGgaCGG- -5'
29543 3' -56.1 NC_006151.1 + 67937 0.73 0.507693
Target:  5'- aGACGCGgcCGcGCGcccacCACGCGCCggggGCCa -3'
miRNA:   3'- -CUGCGCauGU-CGUu----GUGCGCGGa---CGG- -5'
29543 3' -56.1 NC_006151.1 + 110183 0.73 0.527365
Target:  5'- -cCGCGUGCcGCcugauAGCGCGcCGCCUGCg -3'
miRNA:   3'- cuGCGCAUGuCG-----UUGUGC-GCGGACGg -5'
29543 3' -56.1 NC_006151.1 + 56456 0.73 0.534317
Target:  5'- cGCGCGUGCuGCccCACuaccccaucgcccaGCGCCUGCUg -3'
miRNA:   3'- cUGCGCAUGuCGuuGUG--------------CGCGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 56363 0.73 0.527365
Target:  5'- cGGCGCGga-AGCuACG-GCGCCUGCUg -3'
miRNA:   3'- -CUGCGCaugUCGuUGUgCGCGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 137861 0.73 0.507693
Target:  5'- gGGCGUGUACGcGCAcGgGCGCaGCCUGCg -3'
miRNA:   3'- -CUGCGCAUGU-CGU-UgUGCG-CGGACGg -5'
29543 3' -56.1 NC_006151.1 + 92678 0.73 0.537307
Target:  5'- --gGCGgcCGGgGACGCGCGCUcGCCg -3'
miRNA:   3'- cugCGCauGUCgUUGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 101289 0.73 0.507693
Target:  5'- gGGCGCGgGCGGCGcCGCGCuGCaCUGCg -3'
miRNA:   3'- -CUGCGCaUGUCGUuGUGCG-CG-GACGg -5'
29543 3' -56.1 NC_006151.1 + 135909 0.73 0.497974
Target:  5'- -cCGCGaccccgGCGGUcguGCGCGCGCuCUGCCg -3'
miRNA:   3'- cuGCGCa-----UGUCGu--UGUGCGCG-GACGG- -5'
29543 3' -56.1 NC_006151.1 + 112810 0.73 0.527365
Target:  5'- cGCGCGUcGCuGCA--GCGCGCCUucGCCa -3'
miRNA:   3'- cUGCGCA-UGuCGUugUGCGCGGA--CGG- -5'
29543 3' -56.1 NC_006151.1 + 121412 0.73 0.507693
Target:  5'- cGGCGCGgGCGGgGACGucgcggggcuCGCGCCgGCCu -3'
miRNA:   3'- -CUGCGCaUGUCgUUGU----------GCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 100805 0.73 0.527365
Target:  5'- gGugGCGggcgACGGCGAgGCGgGCCccgacgccgUGCCg -3'
miRNA:   3'- -CugCGCa---UGUCGUUgUGCgCGG---------ACGG- -5'
29543 3' -56.1 NC_006151.1 + 136842 0.73 0.507693
Target:  5'- cGACGCGgccgcCGGCcuCGCGCGCCgcgugaccGCCg -3'
miRNA:   3'- -CUGCGCau---GUCGuuGUGCGCGGa-------CGG- -5'
29543 3' -56.1 NC_006151.1 + 137135 0.73 0.527365
Target:  5'- cGGCGCG-GC-GCGACGCgGCGCCggagaugGCCg -3'
miRNA:   3'- -CUGCGCaUGuCGUUGUG-CGCGGa------CGG- -5'
29543 3' -56.1 NC_006151.1 + 130548 0.73 0.527365
Target:  5'- cGCGCG-AgGGCGGCGCGCuGCC-GCCc -3'
miRNA:   3'- cUGCGCaUgUCGUUGUGCG-CGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 10465 0.73 0.501852
Target:  5'- gGACGCGgcgGCGGUgaaGgaggagagccgcccgGCGCGCGCCcGCCg -3'
miRNA:   3'- -CUGCGCa--UGUCG---U---------------UGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 20773 0.73 0.507693
Target:  5'- gGACGCGcgccggGCgAGCGGCuCGCGCUUGCg -3'
miRNA:   3'- -CUGCGCa-----UG-UCGUUGuGCGCGGACGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.